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RAFL06-11-B12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87578)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-11-B12 - 5 prime EST 
GAGATCTGGT TATTTTCTTC CTTCGTGTGG AACAGCCATG GCTATGGAGT 
TTCTGAGGAG CAGTAGAAGA ATATTGGAAT CTTCTGGATG CGCGATCGCT 
TTGATTTTTC TGCTCTTCAT CCATGGAGCT CACTCATTCT ATCTCCCAGG 
TGTTGCTCCT CAGGATTTCG AGAAGGGTGA TGAGCTGAAG GTGAAAGTGA 
ATAAATTAAC TTCCATAAAG ACTCAGCTTC CATACTCGTA TTACTCCCTT 
CCTTTTTGTC GCCCTAGCAA GATTGTGGAC AGTACTGAGA ATCTTGGAGA 
AGTGCTTCGG GGTGACCGGA TTGAGAATGC CCCATACTCG TTTAAAATGC 
GGGAGGCACA AATGTGCAAT ATTCTCGGCC GGGTCACTCT TGATGCCAAG 
ACAGCTAAAG CGTTTAAAGA AAAGATCGAT GATGAGTACC GGGTCAACAT 
GATCCTCGAC AACCTTCCTC TGGTTGTTCC AATTGAAAGA GTCGACCAGG 
GTTCTCCCTC TGTTGTTTAT CAGCTTGGTT ATCATGTTGG TCTTAAAGGC 
CAGTACGAGG GGAGCAAAGA GCAGAAGTTC TTTATGCACA ATCACTTGGC 
ATTTACAGTC CGCTNTCACA GAGATATCCA AACTGATGCT GCAAGAATCG 
TGGGATTTGA GGGTAAACCT T

Gene models with high sequence identity

  1. AT5G10840.1 [+] show detail - Endomembrane protein 70 protein family
    E-value: 0; Score: 99.70

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-11-B12 - 3 prime EST 
ACTTATAAAA ATTGGTTATA TTGCAAAAAT TCTCAGAAAG TGTTGTTATT 
TGACAAATCA AACAAAATAC ACTCTATTAC ATATATTAAA ATCTCTTTTG 
GTATGCAACA AAATAGAACC TAAAATGCAA CAAAACCGAT TTTAAAAAGA 
AAAATAAGAT AAACTATGAT CACCTTTTCT TCTTTGTTTC CTTAATCGCC 
ATGATGATCA TCATATCCTC TAATCGATCT TAACAGAGGA ATAGATGAGC 
CTTGTGAACC AGAGACAAGC ATAGAACCCT ATTGTTCCTG TGAGCACAAA 
AAATGCGTAG GAGGCGATGA GCATGTACCC AAAGTAAAGC ATCGCAGAGA 
CCAGTTTGGT GATCTGAAGC TTTGTGAAGA AGTAGAACGT GGCATAGAGG 
AAGAGGTAGA GAGCTGATGA GCCTGATGTG AGGTATGATC TCCACCACCA 
AAGGTAGTCC TCACTGCAAA GCTGGAAGTA GCAGAGTACT ACGGTTATCT 
CGGCGCA

Gene models with high sequence identity

  1. AT5G10840.1 [+] show detail - Endomembrane protein 70 protein family
    E-value: 0; Score: 100.00

AT5G10840.1

Model type
Protein coding
Short Description
Endomembrane protein 70 protein family
Computational Description
Endomembrane protein 70 protein family; LOCATED IN: integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G25100.1); Has 1652 Blast hits to 1622 proteins in 358 species: Archae - 0; Bacteria - 81; Metazoa - 616; Fungi - 232; Plants - 453; Viruses - 0; Other Eukaryotes - 270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-B12 introduced

  • F08813 - seed::increased size / seed::increased length
  • F14102 - Specific phenotypes were NOT observed.
  • F19009 - Specific phenotypes were NOT observed.
  • F30248 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found