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RAFL06-11-B16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87579)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-11-B16 - 5 prime EST 
GACTCGTCTG CCTTCTTCCG CATCTCTTTT CATTTCTCTC TGATTTCTCG 
ATCTCTCCGT CCAACTATGT CTGCCTTCAC AAGCAAATTC GCCGATGAGT 
TGATCGCCAA CGCTGCCTAC ATCGGCACAC CTGGAAAAGG TATTTTGGCT 
GCTGATGAGT CCACTGGTAC CATTGGAAAG CGTCTTGCGA GCATCAACGT 
CGAGAACGTT GAGACCAACA GACGTAACCT CCGTGAGCTT CTCTTCACCG 
CCCCTGGTGC TCTTCCATGC CTCAGTGGTG TCATCCTTTT CGAAGAGACT 
CTGTACCAAA AGAGTTCCGA TGGTAAGCTT TTCGTTGATA TCTTGAAGGA 
AGGAGGAGTT CTTCCCGGTA TCAAGGTTGA CAAGGGTACC GTTGAGCTAG 
CTGGAACCGA CGGTGAGACC ACCACTCAAG GTCTTGACGG TCTCGGTGAC 
AGATGCAAGA AGTACTACGA AGCTGGTGCT CGTTTCGCCA AGTGGCGTGC 
AGTCCTCAAG ATCGGAGAGA ACGAGCCATC TGAGCATTCC ATTCATGAGA 
ACGCTTACNG ATTAGCTAGA TACGCTGTTA TCTGCCAAGA GAACGGTCTT 
GTACCAATTG TCGAGCCTGA GATCCTAGTC GATGGATCCC ATGACATNCA 
NAAGTGTGCT G

Gene models with high sequence identity

  1. AT3G52930.1 [+] show detail - Aldolase superfamily protein
    E-value: 0; Score: 99.55

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-11-B16 - 3 prime EST 
CAAATTCCAC AAGAGGTTCA ACAGAAATAA CCTCAAATGA CTTTTTTATT 
TGGGCAGTGT TTTTAAAATA CTCAATTCTA AAAAACAAAA CCCAATCAAA 
ATCAAAACAC AAATCCAAAA GGAAAATGAA GAAAAAACAC TTATAATCCG 
ATAATGTCAA GTAGAAAAAC GAAAAATCCC TAGAAATATA TCCAGGAAGA 
TGACAAACGT CACAATTCAA CCCGTGGACG ATGCTCAGTA CTTGTAATCC 
TTCACGTGAA GGCTCTCAGC TGCTCCATCA CCAAGCTTAG CGTCACCCTT 
GTAGGTTCCG AGTGTGGCTT CAGAGTTAGC CTTGCACCTC ACATACAACG 
CCTCTTGAGC TGCCTTGACA TTCTCCTCTT TACCTGCCCA TGTCTTCAAG 
GTAGACTGCT GCAACGCACG TCCGAATGAG AAAGACAATG ACCATGGCTT 
CTTGGTCTTC AACTGGTTCA TGGCGTTCAA GTTCCTGGTA GCTTCTTCCT 
CGCTCTGTCC TCCAGATAAG AAGACAATGG CTGGAACAGC TGCTGGGACG 
GTTCTCTGAA GGGCACGGAC GGTGTGCTCA GCGATGACTT CAGGTGAAAC 
CTTGGGGCTG TCAGATCC

Gene models with high sequence identity

  1. AT3G52930.1 [+] show detail - Aldolase superfamily protein
    E-value: 0; Score: 99.84

AT3G52930.1

Model type
Protein coding
Short Description
Aldolase superfamily protein
Computational Description
Aldolase superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cadmium ion, response to karrikin, response to salt stress, pentose-phosphate shunt; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT2G36460.1); Has 5003 Blast hits to 4997 proteins in 974 species: Archae - 0; Bacteria - 709; Metazoa - 1414; Fungi - 8; Plants - 477; Viruses - 0; Other Eukaryotes - 2395 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-B16 introduced

  • F01003 - Specific phenotypes were NOT observed.
  • F10838 - Specific phenotypes were NOT observed.
  • F17748 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / stem::present in fewer numbers in organism / stem::abnormal
  • F18503 - Specific phenotypes were NOT observed.
  • F19244 - stem::abnormal / whole plant::increased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism
  • F19611 - Specific phenotypes were NOT observed.
  • F26406 - seed::increased size
  • F26414 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found