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RAFL06-11-C05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03064)

full reading [+] show sequence

Nucleotide sequence: RAFL06-11-C05 - full reading 
ATCGTCAGCC ATGGATACTC TCTCAGCATC CGTTTCATCC TTGAACCTCC 
CTTCTCTTCC TCCACCACCG CAGCCACCGT TGAGATCCAT CTCCAGCCGC 
TTTAAATCCA CCGTAAACGC CACCACTTCT GCTTCATCTA CCAATCTTTC 
AAAACCAACA TCGTCTTCAC CTTCTTCAGC ATCATACTCA CAGAACAGAA 
ACCCTAATTT CCTCAAAGCA ATCTCGTTTC ATCTTCCGCA AACGAAACCC 
TCGAGAGTTG TTACTCCTCC TCCTCCTCCG GTGCATGATA AAGCGGCCTC 
AGGGTTTGCT GCGGCGCTCG TTAGCGTTTG TCAATCGAAG AATTGTCTTG 
GTCGGACTCA AGAAGATGTC AGAAGATTGA TGGAGTTTCT TGTGGGAGAA 
GAAAAGAAGA GGAACAAGGT CTTAGTCAAT GATGTTGTTG AGAGAGGTAA 
ATTTGGTAAA CACTTCAAGG GCTTGGTCAA GATGTTGATT GCAAGAGGTA 
AATCTGGGAT TCTGGTGGAT GTTTTAATGG AATTTGAGAG AATCTGTAAT 
GAATTGGTCT CAAAAAAACT TGTCTGGGTT TCTTGATGAT ACAAAAGATT 
ATATCTAATC CAAAGTTTGC TTCTTT

Gene models with high sequence identity

  1. AT4G00895.1 [+] show detail - ATPase, F1 complex, OSCP/delta subunit protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G00895.1

Model type
Protein coding
Short Description
ATPase, F1 complex, OSCP/delta subunit protein
Computational Description
ATPase, F1 complex, OSCP/delta subunit protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: proton-transporting ATP synthase complex, catalytic core F(1), plasma membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, OSCP/delta subunit (InterPro:IPR000711); Has 48 Blast hits to 48 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 13; Plants - 26; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-C05 introduced

  • F05550 - Specific phenotypes were NOT observed.
  • F07225 - seed::increased size / seed::increased length / seed::decreased width
  • F07305 - stem::abnormal
  • F07702 - seed::increased size
  • F13429 - Specific phenotypes were NOT observed.
  • F18220 - seed::increased size / seed::increased length
  • F25117 - Specific phenotypes were NOT observed.
  • F25416 - seed::decreased size / seed::decreased length
  • F28031 - Specific phenotypes were NOT observed.
  • F29742 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

14 mutant lines found