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RAFL06-11-E12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87580)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-11-E12 - 5 prime EST 
TAAAACTCTT TCTCTGCAAG AAAACCAATC TCTCTCTCTT TCACTTTCTT 
AAACCCTTTA TCTCTCTAAA ACCCTCCTTT TTAGGTAAAA AAGTTTTGGT 
GCCTGACTCA AAAAAGGTTG GGTCTTTTAC TGCATTTTGA AATGGCGATT 
GAAGATTACG AGAACCCAAA TCGAGAAATC AAACCTAAGA ACAGAAGATT 
CATGGAAGGA GAGAATCAGT GGCCTATATG GCTCAAACCT TTACTAAACC 
AACACTTTTT TGCTCAATGC AAGTTTCATG GACACTTACC TAGAACCGAA 
TGCAAAATGT ATTGCTTAGA CTGTACCAAT GACTCGTTTT GTTCTCTCTG 
TCTTTCTGAA CACGAGAATC ATCGTACCAT TCAGATAAGG ATATCATCTT 
ATCATAATGT GACAAAGGTC GATGAGATAC AGAAATACTT AGACATATCA 
AGCATTCAGA CATATGTGAT CAATAGCTCA AAGGTTTTGT TCTTGAATGA 
GAGGCCTCAG TCTAAGCCTG GTAAAGGTTT TACTAATGCC TGCATGGTCT 
GTTATCGTGG CCTTGCCGAA AACTGCTTCC GCTTCTGCTC TATTGGCTGC 
AAGGTTGCAG GAACATCTGG AGTCTTCCAG AAGAGAGTGA AGCATACA

Gene models with high sequence identity

  1. AT5G46710.1 [+] show detail - PLATZ transcription factor family protein
    E-value: 0; Score: 99.85

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-11-E12 - 3 prime EST 
AACTAATTAT CTATTTTTGT CATATAATCT AATCAAAAAC AAAATTTAGA 
ACAAGGAAAT AGTCATAAAA ACACCATAAA CCACTCACTG TCTAGTCTCA 
TTGCATCACA CCAAAACTTT ACAAGAAGAT ATTGTATATA TATATATACA 
C

Gene models with high sequence identity

  1. AT5G46710.1 [+] show detail - PLATZ transcription factor family protein
    E-value: 5e-81; Score: 100.00

AT5G46710.1

Model type
Protein coding
Short Description
PLATZ transcription factor family protein
Computational Description
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT4G17900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-E12 introduced

  • F03613 - Specific phenotypes were NOT observed.
  • F13902 - Specific phenotypes were NOT observed.
  • F24425 - Specific phenotypes were NOT observed.
  • F28811 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found