1. Home
  2. Full-length cDNAs
  3. RAFL06-11-F24

RAFL06-11-F24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07538)

full reading [+] show sequence

Nucleotide sequence: RAFL06-11-F24 - full reading 
ATACCATAAA AAACATGAAA ATCCTCTCAC TTTCACTTCT CTTGCTCTTG 
GCCGCTACGG TCTCGGCATC CGTTCCAGGG CTCATCGAAC TCGTCGATTC 
GAAAACCATC TTTGGGAACG TAGCCGAACT CTTAGAGAAA GAGAAACTTT 
CCATCAACTA CGCCAACTGC AGAAGCTGGC ACCTTGGTGT TGAGACCTCT 
AACATCATAG ACTTCGACAC GGTGCCCGCA AATTGCAAAG ACTATGTTGA 
AGACTACTTG ATCACTTCCA AACAGTACCA ATACGACTCC AAAACCGTGT 
GCAAAGAGGC TTATTTCTAT GCCAAAGGAC TTGCCCTAAA GAACGACACC 
GTCAATGTTT GGATCTTTGA CCTAGATGAT ACCCTCCTCT CTAGTATTCC 
CTACTACGCA AAATATGGAT ACGGAACAGA GAAGACCGAC CCGGGGGCGT 
ACTGGTTGTG GTTAGGGACC GGAGCATCAA CCCCTGGACT CCCGGAGGCC 
TTGCATCTTT ACCAAAACAT CATAGAGCTC GGGATTGAAC CCATCATACT 
CAGTGACCGT TGGAAGTTGT GGAAGAATGT CACTCTCGAC AATCTCGAAG 
CTGCTGGCGT GACCTACTGG AAGCATCTCA TATTGAAGCC TAATGGTTCG 
AACTTGAGGC AAGTGGTGTA CAAGTCAAAG GTGAGGAAGA GTCTCGTGAA 
GAAAGGATAC AACATCGTTG GCAATATCGG AGATCAATGG GCTGATTTGG 
TTGAGGATAC CCCTGGGAGG GTTTTTAAGC TCCCAAATCC ACTCTACTAC 
GTACCTTCTT AAGAATCTAT CTTCATCGCA TTGTCCCCTT GTATACACTT 
CATATCTATG TCGTTTCGTT TATCTTTGTA GCCGTTTTGG CACCGCTGCA 
TAAATAAAAT GTCTATCCTA TCGTAACTTA ATAAGTACAA AGACTTCGTA 
CTAAATGTTG TTTTTCTTTA AAGGGGTCAT TAATTAAGTG GCCATGAAAT 
GATATTCAC

Gene models with high sequence identity

  1. AT5G24770.1 [+] show detail - vegetative storage protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Vegetative storage protein/acid phosphatase 1e-138
superfamily HAD-like 3.8e-10
HMMPfam Acid phosphatase (Class B) 4e-70
HMMTigr Acid phosphatase, plant 3.8e-162

See the detailed result >

AT5G24770.1

Model type
Protein coding
Short Description
vegetative storage protein 2
Curator Summary
Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.
Computational Description
vegetative storage protein 2 (VSP2); FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: in 8 processes; LOCATED IN: cytosolic ribosome, vacuole; EXPRESSED IN: fruit, flower, leaf; EXPRESSED DURING: seedling growth, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: vegetative storage protein 1 (TAIR:AT5G24780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-F24 introduced

  • F19223 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found