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  3. RAFL06-11-J16

RAFL06-11-J16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03082)

full reading [+] show sequence

Nucleotide sequence: RAFL06-11-J16 - full reading 
CTCAGCAGCT TCTTCTGCTT TCAATTACTC TCGCCGACGA TTTTCTCACC 
GGAAAAAAAC AATATCATTG CGGATACACA AACTATAATG GACCTCCTCT 
TGCTGGAGAA GTCTTTAATC GCCGTCTTCG TGGCGGTGAT TCTCGCCACG 
GTGATTTCAA AGCTCCGCGG CAAGAAATTG AAGCTACCTC CAGGTCCTAT 
ACCAATTCCG ATCTTCGGAA ACTGGCTTCA AGTCGGAGAT GATCTCAACC 
ACCGTAATCT CGTCGATTAC GCTAAGAAAT TCGGCGATCT CTTCCTCCTC 
CGTATGGGTC AGCGAAACCT AGTCGTCGTC TCCTCACCGG ATCTAACAAA 
GGAAGTGCTC CTCACTCAAG GCGTTGAGTT TGGATCCAGA ACGAGAAACG 
TCGTGTTCGA CATTTTCACC GGGAAAGGTC AAGATATGGT GTTCACTGTT 
TACGGCGAGC ATTGGAGGAA GATGAGAAGA ATCATGACGG TTCCTTTCTT 
CACCAACAAA GTTGTTCAAC AGAATCGTGA AGGTTGGGAG TTTGAAGCAG 
CTAGTGTTGT TGAAGATGTT AAGAAGAATC CAGATTCTGC TACGAAAGGA 
ATCGTGTTGA GGAAACGTTT GCAATTGATG ATGTATAACA ATATGTTCCG 
TATCATGTTC GATAGAAGAT TTGAGAGTGA GGATGATCCT CTTTTCCTTA 
GGCTTAAGGC TTTGAATGGT GAGAGAAGTC GATTAGCTCA GAGCTTTGAG 
TATAACTATG GAGATTTCAT TCCTATCCTT AGACCATTCC TCAGAGGCTA 
TTTGAAGATT TGTCAAGATG TGAAAGATCG AAGAATCGCT CTTTTCAAGA 
AGTACTTTGT TGATGAGAGG AAGCAAATTG CGAGTTCTAA GCCTACAGGT 
AGTGAAGGAT TGAAATGTGC CATTGATCAC ATCCTTGAAG CTGAGCAGAA 
GGGAGAAATC AACGAGGACA ATGTTCTTTA CATCGTCGAG AACATCAATG 
TCGCCGCGAT TGAGACAACA TTGTGGTCTA TCGAGTGGGG AATTGCAGAG 
CTAGTGAACC ATCCTGAAAT CCAGAGTAAG CTAAGGAACG AACTCGACAC 
AGTTCTTGGA CCGGGTGTGC AAGTCACCGA GCCTGATCTT CACAAACTTC 
CATACCTTCA AGCTGTGGTT AAGGAGACTC TTCGTCTGAG AATGGCGATT 
CCTCTCCTCG TGCCTCACAT GAACCTCCAT GATGCGAAGC TCGCTGGCTA 
CGATATCCCA GCAGAAAGCA AAATCCTTGT TAATGCTTGG TGGCTAGCAA 
ACAACCCCAA CAGCTGGAAG AAGCCTGAAG AGTTTAGACC AGAGAGGTTC 
TTTGAAGAAG AATCGCACGT GGAAGCTAAC GGTAATGACT TCAGGTATGT 
GCCATTTGGT GTTGGACGTC GAAGCTGTCC CGGGATTATA TTGGCATTGC 
CTATTTTGGG GATCACCATT GGTAGGATGG TCCAGAACTT CGAGCTTCTT 
CCTCCTCCAG GACAGTCTAA AGTGGATACT AGTGAGAAAG GTGGACAATT 
CAGCTTGCAC ATCCTTAACC ACTCCATAAT CGTTATGAAA CCAAGGAACT 
GTTAAACTTT CTGCACAAAA AAAAGGATGA AGATGACTTT ATAAATGTTT 
GTGAAATCTG TTGAAATATT CCCTTGTTTT GCTTTTGTGA GATGTTTTTG 
TGTAAAATGT CTTTAAATGG TTCGTTCTAC GATTGCAATA ATAATTAGTG 
GTGCTCATTG TTTTGGATGG ATCAATGTTA TACTTATATC ATTT

Gene models with high sequence identity

  1. AT2G30490.1 [+] show detail - cinnamate-4-hydroxylase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, E-class, group I 2.5e-56
FPrintScan Cytochrome P450, C-terminal 3.1e-07
FPrintScan Cytochrome P450, C-terminal 3.1e-07
FPrintScan Cytochrome P450, C-terminal 3.1e-07
superfamily Cytochrome P450 4.4e-114
HMMPanther CINNAMATE 4-HYDROXYLASE 0
HMMPanther Cytochrome P450 0
PatternScan Cytochrome P450, conserved site 0
HMMPfam Cytochrome P450 7.3e-112
Gene3D Cytochrome P450 1.7e-105

See the detailed result >

AT2G30490.1

Model type
Protein coding
Short Description
cinnamate-4-hydroxylase
Curator Summary
Encodes a cinnamate-4-hydroxylase. Mutations in this gene impact phenylpropanoid metabolism, growth and development.
Computational Description
cinnamate-4-hydroxylase (C4H); FUNCTIONS IN: trans-cinnamate 4-monooxygenase activity; INVOLVED IN: in 9 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 98, subfamily A, polypeptide 3 (TAIR:AT2G40890.1); Has 31278 Blast hits to 31002 proteins in 1609 species: Archae - 48; Bacteria - 2734; Metazoa - 11804; Fungi - 6596; Plants - 9113; Viruses - 3; Other Eukaryotes - 980 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-J16 introduced

  • F27936 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found