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  3. RAFL06-11-M09

RAFL06-11-M09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09388)

full reading [+] show sequence

Nucleotide sequence: RAFL06-11-M09 - full reading 
AGCTGCTCGA TCTCTCTCTG ATCACAACAA TCATAAGCGA TGAGAGGAGC 
TAGACCCGAT GAATTCAATT TTAGTACGAA TCCATCAACG CCAAACACTG 
GTCAGCCGAC ACCGACGTAC CCCGCCGGTG TTGGCGGCGG CGGCGGTGGA 
AGGAAAAAAG GCGTTGGCGT GAGGACGTGG TTGGTACTTA ACTCGTCAGG 
GCAATCGGAG CCGAAGGAAG AAGGGAAACA CTCCATCATG CGGCGAACGG 
GATTACCGGC GCGTGATCTT AGGATTCTCG ATCCACTGTT GTCGTATCCA 
TCTACTGTTT TAGGTAGAGA GAGAGCGATT GTCATCAATT TGGAGCATAT 
CAAGGCAATC ATCACTGCTC AAGAAGTTTT GTTGCTTAAT TCCAAGGATC 
CTTCGGTCTC ACCCTTTATT GATGAGTTGC AGAGGCGGAT TCTCTGTCAC 
CATCACGCCA CTAAACCTCA GGAGGAGCAG AACTCTGGGG GAGAGCCTCA 
TACGAGGGTA GATCCTGCCC AAGGAGAAGC TGGAACGGAA CAATCTTCTG 
GGGATCAAGG GAGTGAAGCC AAGAAGGATG CGAAGCAAAG TCTTGAGAAT 
CAAGATGGAT CGAAGGTTCT TCCATTTGAG TTTGTTGCTC TGGAAGCCTG 
TCTTGAAGCT GCATCAAGCA GTTTGGAACA TGAGGCCTTA AGATTGGAGT 
TAGAGGCTCA TCCAGCCCTG GACAAGCTTA CTTCCAAGAT CAGTACCCTT 
AATTTGGAGC GGGTTCGACA GATTAAAAGC AGGCTGGTTG CAATAACTGG 
ACGTGTTCAG AAGGTGAGGG ATGAGCTAGA ACATCTGCTA GACGATGATG 
AAGATATGGC TGAGATGTAT CTTACAGAGA AGTTAGCTCA GAAACTTGAG 
GATTCGTCAA ATTCCTCTAT GAATGAGAGT GATACCTTCG AGGTTGATCT 
TCCTCAAGGA GATGAGGATG ACAGGCTTCC TCCCGAATTT GCATCAGAGG 
CTAACAGAGA TGGAAGGTAT CTTCAAGCAA ATGATGCTCA CGAGCTTCTT 
ATGAGTACTC AAAGTGCACT TAGCAGAAAT AGCCGTGGGA CTCACACAAG 
CTCAACCCGG AGTGCCATGA CCAACAAATT AGATGTGGAA GAGCTTGAAA 
TGCTTTTGGA AGCATATTTC GTGCAGATCG ATGGTATACT GAACAAACTA 
TCAACACTAA GGGAATATGT GGATGACACG GAGGACTACA TCAACATAAT 
GCTAGATGAC AAGCAGAATC ATCTTCTGCA GATGGGTGTG ATGCTAACAA 
CAGCTACTCT GGTGATGAGC GCCTTTATCG CAGTTGCTGG TGTATTTGGT 
ATGAATATAA CCATAGAGTT GTTCACGGAT AATAAACATG GTCCAAGTAG 
ATTCATTTGG ACTGTGATTG GAGGTTCTAT CGGCAGTATA TGCCTCTACG 
TTGGTGCCAT CGGGTGGTGC AAGTACAAGC GCCTTCTTGA ATGAGTCGAC 
CAACAACATA TTGGGAGAGG AGAATAATGT CGCATTGCCA CAAATCTATT 
TAAGCTAACA AGACTTTTAT GTATATCCTT TGTTCTTGAG GATCTTTACT 
ACTCTCAAAC CTTTTTTTAT CCGTCTCCTT CACTATTTGC ATTTCTTTCG 
ATTTAATAAA AGAGCAAATT GCATAGTTTC CTTCTTGCTT ATTTC

Gene models with high sequence identity

  1. AT3G19640.1 [+] show detail - magnesium transporter 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Mg2+ transporter protein, CorA-like 9e-07
HMMPanther RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 2.4e-119

See the detailed result >

AT3G19640.1

Model type
Protein coding
Short Description
magnesium transporter 4
Curator Summary
Transmembrane magnesium transporter. One of nine family members.
Computational Description
magnesium transporter 4 (MGT4); FUNCTIONS IN: magnesium ion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mg2+ transporter protein, CorA-like (InterPro:IPR002523); BEST Arabidopsis thaliana protein match is: magnesium transporter 2 (TAIR:AT1G16010.3); Has 942 Blast hits to 823 proteins in 177 species: Archae - 2; Bacteria - 38; Metazoa - 107; Fungi - 287; Plants - 404; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-11-M09 introduced

  • F01303 - Specific phenotypes were NOT observed.
  • F17617 - seed::increased size / seed::increased length
  • F18746 - Specific phenotypes were NOT observed.
  • F27414 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found