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RAFL06-12-A07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03092)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-A07 - full reading 
GACTCATTGA GAATCAAAAA TCAAAATGTC TTCTCATACT GCAACTAAGT 
ATGATGTTTT CCTAAGTTTC AGAGGGCATG ACACTCGCCA CAACTTCATC 
AGTTTTCTCT ACAAAGAACT GGTTCGAAGG AGCATTCGAA CCTTCAAAGA 
CGACAAAGAG CTGGAGAATG GCCAGAGGTT TTCGCCGGAG CTCAAAAGCC 
CCATCGAGGT GTCAAGATTC GCCGTCGTTG TTGTCTCAGA GAACTATGCT 
GCGTCTTCTT GGTGTCTCGA TGAGCTCGTA ACGATCATGG ATTTCGAAAA 
AAAGGGTTCC ATCACCGTGA TGCCCATCTT CTACGGCGTG GAACCGAATC 
ATGTGAGGTG GCAGACCGGA GTACTCGCTG AACAGTTTAA GAAACATGCG 
AGTAGAGAAG ATCCTGAGAA AGTTCTTAAA TGGAGGCAAG CATTGACCAA 
TTTTGCGCAA CTCTCCGGCG ATTGTTCAGG TGATGATGAC TCGAAGCTGG 
TGGACAAAAT TGCTAACGAG ATATCAAACA AGAAGACGAT TTATGCAACA 
ATATGATGAG TCCAGACGAG AAGAAGAAGA AGAAAGGAGA AGGCCCATAA 
GGACTCGCAT GCCCAATCCA AAGTATTCCC AACACTAAGT CATTTTACTT 
AGTCTCTGTT TTCGATTTAG TTACAATAAG CAAGGAGTCT TCCACGATTA 
CAGTTTCCAT CTTTTCCAAG TTTGTAGAAG TTGTTACTCC ACGTTTGTTT 
CCATGTTGTT TCTAGTTGTA AGGAGGTGTA CTCCAAGTAT TTATATCAAT 
GAAAAACAAA ACAAAAGGTA GTCT

Gene models with high sequence identity

  1. AT1G72930.1 [+] show detail - toll/interleukin-1 receptor-like
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Toll-Interleukin receptor 1.6e-42
Gene3D no description 2.5e-06
HMMPfam Toll-Interleukin receptor 1.4e-34
ProfileScan Toll-Interleukin receptor 27.799
Coil coiled-coil 0
HMMSmart Toll-Interleukin receptor 2.7e-39

See the detailed result >

AT1G72930.1

Model type
Protein coding
Short Description
toll/interleukin-1 receptor-like
Curator Summary
Toll/interleukin-1 receptor-like protein (TIR) mRNA,
Computational Description
toll/interleukin-1 receptor-like (TIR); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72910.1); Has 1768 Blast hits to 1683 proteins in 89 species: Archae - 0; Bacteria - 94; Metazoa - 0; Fungi - 0; Plants - 1674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-A07 introduced

  • F06220 - Specific phenotypes were NOT observed.
  • F24502 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found