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RAFL06-12-D24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03101)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-D24 - full reading 
AAAAAAAGAT CAAAACTTTG GAAGTTTTCC TGTGAAAATA ATCTATCCTT 
TTTGCATCAT TTGCGTTTTG GTTGATGAAG AGGATCTGAA GAAGCTGAGA 
TTTAGGAATG ATGATGGGTT TTGCTGTATC GGATGAATTG TTGGGTACTG 
TTGCTCCGAT TGTGGTGTAC TGGTTGTATT CTGGGATTTA TGTAGCGCTC 
TCCTCTTTAG AGAGTTATAG ATTGCATTCA AAGGTTGAAG AAGAAGAGAA 
GAATCTTGTA TCGAAATCTT CTGTTGTGAA AGGTGTTCTT GTTCAACAGG 
TTGTTCAAGC TGTTGTCGCT ATCCTTTTGT TCACGGTGAC GGGAAGTGAT 
GCCGAAGCAG ACAAAGCGCA ACAGTTTTCC TTCTTGGTCC TAGCAAGACA 
GTTTGTGACT GCCATGATAG TCCTCGACAC ATGGCAATAC TTCATGCATC 
GATATATGCA TCAGAACAAG TTCTTATACA AACATATCCA CTCTCAACAC 
CACCGTCTTA TCGTCCCTTA TGCATATGGA GCTTTATACA ACCATCCAGT 
GGAAGGTCTT CTCTTGGATA CAATTGGAGG CGCCTTATCT TTCCTAGTCT 
CTGGTATGTC TCCAAGAACT TCCATCTTCT TCTTCTCTTT CGCCACGATC 
AAAACCGTGG ACGACCATTG CGGTCTCTGG CTACCTGGAA ACTTATTCCA 
TATGGTCTTC AAGAACAACT CGGCTTACCA CGATATCCAT CATCAGCTCT 
ATGGAACCAA ATACAATTTC TCTCAGCCTT TCTTTGTCAT GTGGGATCGG 
ATTCTTGGAA CTTACATGCC TTACTCGCTT GAGAAAAGAG AAGATGGAGG 
ATTCGAAGCT CGCCCGACTA AAGAATTCAA AGACGATTAA GATTTTGGAG 
TTTGGATATA TGTTATGTAT CTGCCCTGAG GTTGGAGAAA TGGATGATAC 
TTTGTGTTAT TGGAGGTGTA GTTTTAAAAT CAGAAACAGA ACTGGTTTTT 
TTGCGTTTTG CGTTTCTTCT CAAGAGCGAA TTTAGCTTGG AGTTTGAGAT 
TTGTATATAA ACATTATTGA GTTGTTGTTC TACTTTCGGT TTTTGTTTTG 
CATGTAATAT TACTACAACA AACATGTTTT TTTTATAATC TATCCATCTA 
CGAGGCCATT CTTGG

Gene models with high sequence identity

  1. AT1G69640.1 [+] show detail - sphingoid base hydroxylase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SUR2 HYDROXYLASE/DESATURASE 3.3e-158
HMMPanther STEROL DESATURASE 3.3e-158
HMMPfam Fatty acid hydroxylase 3.6e-19

See the detailed result >

AT1G69640.1

Model type
Protein coding
Short Description
sphingoid base hydroxylase 1
Curator Summary
Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.
Computational Description
sphingoid base hydroxylase 1 (SBH1); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 2 (TAIR:AT1G14290.1); Has 2400 Blast hits to 2339 proteins in 395 species: Archae - 0; Bacteria - 406; Metazoa - 416; Fungi - 708; Plants - 429; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-D24 introduced

  • F24214 - Specific phenotypes were NOT observed.
  • F28334 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found