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RAFL06-12-J05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03114)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-J05 - full reading 
TAAGAGACAG AGAGATCTTA ACACAAAACA AAGCAAACAC CAAAAAAAAC 
AGAGATGGGT TTGGTTACAG ATGAAGTGAG AGCTAGGGCA GAGAAATACA 
CAGGAGATGA GATATGCCGT GAGAAGACAA AGGAGTTTCT CAAGGAAGTT 
TCTATGCCTA ATGGTTTATT GCCATTGAAG GACATTGAAG AAGTTGGTTA 
CGACAGAGAG ACAGGTATTG TCTGGCTGAA GCAGAAGAAG AGCATCACCC 
ACAAGTTTGA AGCCATTGGT AAACTTGTCT CTTACGCCAC CGAGGTCATT 
GCACAGGTGG AGGTCGGAAA GATCAAGAAG CTTACCGGTG TTAAGGCCAA 
GGAGCTTCTT ATTTGGGTCA CTCTCAATGA GCTTGTCTTG GAGCAGCCGA 
CAAGTTCAGG GAAGATCAAT TTCAGGACAC CAACTGGTCT GTCCAGGACT 
TTCCCAGTGT CTGCTTTCGT TGTTCCTGAA GTTGAGAAGC CTGCAACGGA 
GAAGAACAAT GGAACCACTG AGGTCAAAGA AGCTGTTGCA GTCACAGATG 
CTTAGTCTCT CTAATCTTAT TAATCTTATC CTTCCAATCA TGAATTACTT 
TCTGCTATTT GCTGCTTAAT TTCCTTTTAT CAATAAGATG ATACAATTTC

Gene models with high sequence identity

  1. AT1G56580.1 [+] show detail - Protein of unknown function, DUF538
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Protein of unknown function DUF538 1.2e-14
HMMPfam Protein of unknown function DUF538 2.5e-25

See the detailed result >

AT1G56580.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Curator Summary
Encodes SMALLER WITH VARIABLE BRANCHES (SVB), a protein with a conserved domain of unknown function (DUF538). The trichomes of the SVB mutants are smaller and exhibit branches of variable length and number.
Computational Description
SMALLER WITH VARIABLE BRANCHES (SVB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G09310.1); Has 365 Blast hits to 365 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-J05 introduced

  • F08314 - seed::increased size
  • F18211 - Specific phenotypes were NOT observed.
  • F21534 - Specific phenotypes were NOT observed.
  • F25841 - Specific phenotypes were NOT observed.
  • F28443 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found