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RAFL06-12-J07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03115)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-J07 - full reading 
GTGAAGTCTC TTATATATAA GTATCGAGAG AATTAGGGTT TTCTAGTCTA 
GTGTTTCCGG GAGCAGCCTG AGCAGGAGGA AGAAGACGAA GAAGAAGAGG 
AGCAGCTACT ACCATGGTTC TCAAGACGGA GCTTTGTCGT TTCAGTGGAC 
AGAAGATTTA CCCAGGAAGA GGAATTAGGT TTATCCGATC TGATTCTCAG 
GTTTTCTTGT TTCTTAACTC AAAATGTAAG AGGTACTTCC ATAACAAGTT 
GAAGCCATCC AAGCTTGCAT GGACTGCCAT GTACAGAAAG CAACACAAGA 
AGGATGCAGC ACAAGAGGCT GTGAAGAGAA GGAGACGTGC CACCAAGAAG 
CCATACTCAA GGTCCATTGT TGGTGCTACC TTGGAAGTAA TTCAGAAGAA 
GAGAGCTGAG AAGCCTGAAG TTCGTGATGC AGCCAGGGAA GCTGCTCTGC 
GTGAGATCAA GGAAAGAATC AAAAAGACCA AAGATGAAAA GAAGGCTAAG 
AAGGTGGAAT TTGCTTCTAA GCAACAGAAG GTCAAGGCTA ATTTCCCCAA 
AGCTGCTGCT GCATCCAAGG GTCCTAAGGT GGGAGGTGGT GGTGGCAAAC 
GCTGAAGAGC TTAAAGCCAT CTTTTCTCAC TCTGCGTCTT TTCTGCTAGT 
AGCTACTTTT AGTAGTTGAT GTTCATTTCT GAATATTTGC AAAACATAAA 
CCTTGTTATT TCGTTTTTGT CTCTCACTTT TGCTACTCTT ATAATATCAG 
ACTTGAGAAT TTTGCTGCTT ATGAACTTTA TTTCACC

Gene models with high sequence identity

  1. AT3G53020.1 [+] show detail - Ribosomal protein L24e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein L24e 0
HMMPfam Ribosomal protein L24e 5.4e-37
Coil coiled-coil 0
superfamily Glucocorticoid receptor-like (DNA-binding dom 1.6e-18
HMMPanther 60S RIBOSOMAL PROTEIN L24 1.4e-75
HMMPanther Ribosomal protein L24e 1.4e-75
Gene3D Ribosomal protein L24e 1.7e-20
HMMSmart TRASH 3.8e-07

See the detailed result >

AT3G53020.1

Model type
Protein coding
Short Description
Ribosomal protein L24e family protein
Curator Summary
RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.
Computational Description
SHORT VALVE1 (STV1); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: auxin mediated signaling pathway, gynoecium development, translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: ribosomal protein L24 (TAIR:AT2G36620.1); Has 1463 Blast hits to 1456 proteins in 346 species: Archae - 110; Bacteria - 20; Metazoa - 460; Fungi - 300; Plants - 340; Viruses - 0; Other Eukaryotes - 233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-J07 introduced

  • F00747 - Specific phenotypes were NOT observed.
  • F07901 - Specific phenotypes were NOT observed.
  • F13512 - Specific phenotypes were NOT observed.
  • F15938 - Specific phenotypes were NOT observed.
  • F21437 - seed::increased size / seed::increased length
  • F21903 - cauline leaf::abnormal / stem::abnormal / stem internode::decreased length
  • F23605 - seed::increased length

Mutant lines with disrupted or induced

15 mutant lines found