1. Home
  2. Full-length cDNAs
  3. RAFL06-12-K17

RAFL06-12-K17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07556)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-K17 - full reading 
AAGAACTAGT CAGTTTCTTT GTTTTAGACA ACAAGAATCT GTGAACTAAC 
ACAAAAACAT TGAAAGAATG ATCTTAACAA TGAAACTTGT TCACCCTCTC 
CATCACTCTT TGTCTTCCTC CATTCCCTTT CCCTCAAGAA AAAGGCAATC 
CAAACCGTAC CGGTGCTCGT TACCTTCTCC CGGCTGCGAA AAGGTCATCA 
GAACAGAGAC TGTCCTGCCT CCGGCGCCGG TGAGTTGTGA AGGGAGAAGG 
GTCTTACTTG GATGTCTTCT CGCTACAGCT TCTGGGATTT TGTCAACTGG 
TTCAGCCGAG GCAGTAAGCA CCAGTAGAAG AGCTCTACGT GCATCCAAGT 
TACCGGAAAG CGATTTCACG ACTCTCCCCA ATGGTCTCAA GTACTATGAT 
ATAAAGGTTG GCAATGGAGC AGAGGCTGTG AAAGGATCTC GGGTCGCAGT 
TCACTATGTT GCAAAATGGA AAGGGATAAC GTTCATGACA AGTCGACAAG 
GACTTGGTGT TGGAGGTGGA ACGCCTTATG GGTTTGACGT TGGTCAATCA 
GAGAGAGGCA ATGTTCTGAA AGGACTTGAT CTTGGTGTTG AAGGGATGCG 
TGTAGGCGGT CAGAGATTGG TGATTGTTCC TCCCGAGCTG GCTTACGGGA 
AGAAAGGAGT GCAAGAGATT CCTCCAAACG CTACGATAGA GCTTGACATT 
GAGCTGTTAT CAATCAAGCA GAGTCCTTTC GGGACGCCAG TGAAGATAGT 
TGAAGGCTAA AAGGACTAAT GAAGCCAACA TTGTACCAAG ATTTTCTGTG 
TACATTCAGT AAAAAACTAT AAAATTGATC AAAGCTATGG AAGATTCAAC 
TGTATGAGAA GAATCTGTTT AATGGATTAT ACCGGCTAGT CCGGTTTTGT 
AACCG

Gene models with high sequence identity

  1. AT3G10060.1 [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 2.2e-25
HMMPanther FK506-BINDING PROTEIN 4 PLANT, YEAST 8.7e-35
HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 8.7e-35
ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 22.821
Gene3D no description 1.7e-27
superfamily FKBP-like 8.5e-32

See the detailed result >

AT3G10060.1

Model type
Protein coding
Short Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Computational Description
FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G20810.1); Has 8406 Blast hits to 7908 proteins in 1571 species: Archae - 44; Bacteria - 4267; Metazoa - 1616; Fungi - 433; Plants - 872; Viruses - 0; Other Eukaryotes - 1174 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-K17 introduced

  • F24526 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found