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  3. RAFL06-12-L22

RAFL06-12-L22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07557)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-L22 - full reading 
AGAAGAAGAA GAAAGGGAGA GTCTTGTGAT ATCTACGTAG AAGGAAGATG 
GCCTTATCTC AAGTGTCTGC GTCTCTCGCC TTTTCTCTTC CCAATTCTGG 
TGCCCTAAAG CTAGCCACAA TCACAAACCC AACTTCTACA TGTCGGGTTC 
ATGTTCCGCA ACTTGCTGGA ATCCGATCCA CCTTCGCTTC TGGTTCTCCT 
CTCTTGCCAT TGAAGTTGAG TATGACCCGT AGAGGAGGAA ACAGAGCAGC 
ATCAGTTTCC ATAAGAAGTG AGCAAAGTAC AGAAGGAAGC AGTGGTTTGG 
ATATATGGCT TGGTCGTGGC GCCATGGTTG GTTTTGCAGT TGCCATTACT 
GTTGAGATTT CCACTGGAAA AGGACTTCTT GAGAATTTTG GAGTAGCAAG 
TCCATTGCCT ACGGTTGCTT TAGCTGTTAC AGCATTGGTT GGTGTTCTAG 
CTGCGGTTTT CATCTTCCAA TCTTCTTCTA AAAACTGATC GACAAGAATC 
TTGTTTTGTG ATGCTGCCGA GGATCATTTT CTTGTATTAA GAATCTTGTA 
TTATATATCA CTGTAACTTC TACATCC

Gene models with high sequence identity

  1. AT4G34190.1 [+] show detail - stress enhanced protein 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G34190.1

Model type
Protein coding
Short Description
stress enhanced protein 1
Curator Summary
Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding.
Computational Description
stress enhanced protein 1 (SEP1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-L22 introduced

  • F22914 - Specific phenotypes were NOT observed.
  • F30207 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found