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  3. RAFL06-12-M16

RAFL06-12-M16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03119)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-M16 - full reading 
TGCTTCTCCA TCGCCGTCTA AAAACCCTAA TCTCACTCCG CCTCCTGCGA 
GATCCATCAA CACTTCCGCA AAAATGAAGG TTGTTGCTGC GTTTTTGCTT 
GCCGTCTTGA GCGGGAAAGC TTCCCCAACC ACTGGCGATA TCAAGGATAT 
TCTTGGATCA GTTGGTGCTG AGACAGAGGA TTCTCAGATT GAGCTTTTGT 
TGAAGGAAGT GAAAGGGAAA GACTTGGCTG AGCTAATTGC TGCTGGAAGG 
GAGAAGTTAG CTTCAGTACC ATCAGGAGGT GGTGGTGGTG TTGCGGTTGC 
TTCTGCTACA TCTGGAGGTG GAGGAGGTGG TGGTGCTCCT GCTGCTGAGT 
CCAAGAAAGA AGAGAAGAAA GAAGAGAAAG AAGAATCCGA TGATGACATG 
GGTTTCAGTT TGTTCGAGTA ATGCGGTATA CTTGGCATTT GGTTTTGCTG 
TACCCTTTCG AAATCTTTAT GTCGTTGTTT AGTTTGTTGT ATTCGACTAT 
CTTCTTAGAC TTTGCTGAAA TTCTCAAGAG ATTTTTTTAC TC

Gene models with high sequence identity

  1. AT2G27720.1 [+] show detail - 60S acidic ribosomal protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P2 5.7e-63
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 5.7e-63
Coil coiled-coil 0
HMMPfam Ribosomal protein 60S 2.5e-25

See the detailed result >

AT2G27720.1

Model type
Protein coding
Short Description
60S acidic ribosomal protein family
Computational Description
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27710.4); Has 1976 Blast hits to 1975 proteins in 364 species: Archae - 32; Bacteria - 0; Metazoa - 785; Fungi - 446; Plants - 440; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-M16 introduced

  • F06315 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

2 mutant lines found