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RAFL06-12-N03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03121)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-N03 - full reading 
AAAACATCTG AACACCCAAA GACACAGGAA GAGAGCTAAA GCTGATATAT 
ACTAAGTACT AAGATCATTT GATCAACCTA ATCATCAACA CCACAAAATT 
TTCTTTTCTT GTTTCTCTAA TCGATTAATT TAGTAATAAT GTCTGGAAGA 
GGGAAAGTGA AATCGGAGCC GATGAAGGTT GTGTTCATTA ACACACAGTA 
TGTTGAGACA GATGCTCGTA GCTTCAAGAC CGTTGTTCAA GAACTCACCG 
GTAAGAACGC CATCGTCGCC GCCGGTCCTT TTGATTCGCC CTCTGCTTTC 
GACGGCCGTT GTTACGATGG CGGTAGTAAA ATCGGTGAAG ATACCAGACA 
GCTCCACGGC GGTGGCGGCG GAGGAGGACG AATGGGGACG ACGACGGAGT 
TCGATAGATT ATTCAAAGAG ATGCCTCACA TGGAAGAATT GTATAAACTA 
TGGTCAGAAT ATTGAGTCAT TAATAATTTC TGTGCAATGA TTTTTAAATC 
ATTCGTTTTC TTCCAAAATC TTTTCTTTTT TATCTAATGA GATAATGTTG 
TTGTTGATTT GATTTAATCA TCTTAACTGG ATCGTCACTC TTGAGATTAG 
GTCCAATAAC GAATGTTGTG TTTTGGAAAG TAATTATGAG TTACCTTTCA 
GTC

Gene models with high sequence identity

  1. AT1G78410.1 [+] show detail - VQ motif-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G78410.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G17147.1); Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-N03 introduced

  • F13541 - seed::increased size / seed::increased length
  • F17124 - Specific phenotypes were NOT observed.
  • F28748 - Specific phenotypes were NOT observed.
  • F29304 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found