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  3. RAFL06-12-O04

RAFL06-12-O04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17192)

full reading [+] show sequence

Nucleotide sequence: RAFL06-12-O04 - full reading 
GATAGACTTA ACATTTCATA TAGAGAAACT TGAAACAACA ATCTGAGCAA 
AGAGCGTTTT ATCTTGTTGA TTTTGGAATC TCCATTACGA TGGAAGGTGC 
GGCTGATCAA ACTACGAAAG CGTTATCTGA ATTAGCCATG GATTCTTCTA 
CCACCTTGAA TGCTGCTGAG TCTAGCGCTG GTGATGGAGC TGGACCTCGG 
AGTAAAAATG CTTTGAAGAA GGAACAGAAA ATGAAGCAGA AAGAGGAAGA 
GAAGAGACGA AAGGACGAAG AGAAAAGCTG AAAAGGCTAA ACAAGCACCT 
AAAGCAAGCT CCCAGAAGGC AGTGGCAGCA GATGATGAAG AGATGGATGC 
AACGCAATAC TATGAGAACA GATTGAAATA TCTTGCGGCT GAGAAGGCTA 
AAGGGGAGAA TCCATATCCT CACAAGTTCG CTGTGTCAAT GTCGATTCCT 
AAATACATTG AGACGTATGG TAGTTTGAAC AATGGAGATC ATGTTGAAAA 
CGCTGAGGAG TCTTTAGCTG GGCGGATAAT GAGCAAGCGA TCTTCCTCTT 
CCAAGCTCTT CTTCTATGAT CTACACGGTG ATGATTTCAA GGTCCAAGTC 
ATGGCTGATG CAAGTAAGTC AGGATTGGAT GAAGCTGAGT TCTTAAAGCT 
CCATTCGAAT GCTAAGCGTG GTGATATTGT TGGAGTCATT GGGTTTCCAG 
GAAAAACTAA GAGGGGAGAA TTGAGTATCT TTCCCCGATC ATTTATTCTT 
CTGTCCCATT GCCTCCACAT GATGCCGAGA AAGGCTGATA ATGTTAATGC 
AAAGAAACCT GAAATCTGGG TTCCAGGTCA AACGAGAAAT CCTGAAGCAT 
ATGTTCTGAA AGACCAGGAA TCAAGATATC GTCCGCGTCA TCTTGATATG 
ATTTTGAACG TGGAGGTTCG TCAGATATTC AGGACTAGAG CTAAAATCAT 
CTCCTATGTC CGCAGATTCC TCGACAACAA AAATTTCTTG GAGGTCGAGA 
CACCTATGAT GAACATGATT GCTGGTGGAG CAGCTGCTAG ACCTTTTGTG 
ACACATCACA ATGATCTAGA TATGAGGCTG TACATGCGAA TCGCACCTGA 
ACTCTATCTC AAGCAACTTA TTGTTGGTGG CTTGGAACGT GTTTACGAGA 
TAGGAAAGCA ATTCAGAAAC GAGGGTATAG ACCTGACCCA CAATCCGGAG 
TTCACCACTT GCGAGTTCTA TATGGCTTTT GCAGACTACA ATGACCTGAT 
GGAAATGACT GAGGTTATGT TGAGTGGCAT GGTTAAGGAA TTAACAGGTG 
GTTATAAAAT CAAGTATAAT GCTAATGGGT ATGACAAGGA TCCAATTGAA 
ATCGACTTTA CTCCACCATT CAGGAGGATT GAGATGATAG GAGAGTTAGA 
GAAGGTTGCT AAGCTCAATA TACCAAAAGA CTTGGCTAGC GAAGAAGCTA 
ACAAGTATCT GATTGATGCA TGTGCGAGGT TTGATGTCAA ATGCCCTCCT 
CCTCAGACAA CAGCTCGTCT GTTAGATAAA CTTGTTGGAG AATTTCTGGA 
ACCGACATGT GTGAACCCAA CTTTCATCAT CAACCAGCCC GAGATCATGA 
GTCCTTTGGC TAAATGGCAC AGATCGAAGA GTGGATTGAC AGAGAGATTC 
GAGCTGTTCA TCAACAAACA TGAACTCTGC AATGCCTACA CGGAGCTAAA 
CGATCCTGTG GTACAGCGCC AGCGTTTTGC TGATCAGCTC AAGGATCGAC 
AGTCTGGAGA CGATGAAGCG ATGGCTTTAG ATGAAACATT TTGTAATGCT 
TTAGAATATG GGTTGGCTCC TACAGGTGGC TGGGGATTAG GAATAGACAG 
ACTCTCTATG CTTTTGACCG ACTCACTGAA CATCAAGGAG GTTCTTTTCT 
TCCCGGCAAT GAGGCCACCA CAGGAGGAGT CAGCAGCCGC TCAAGCTCCT 
TTAACAGAAG AGAAGAAATA AGGAGTCTAC ACAAGTTTTC TGACTAAGCT 
TAGTCAATTC GCTATTATGC ACTCTGTTCT CAAGTTACTT GTAATTGCAG 
ACCATATTTT TCAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G11710.1 [+] show detail - lysyl-tRNA synthetase 1
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMTigr Lysyl-tRNA synthetase, class II 1.4e-183
superfamily Class II aaRS and biotin synthetases 1.9e-127
superfamily Nucleic acid-binding, OB-fold-like 3.2e-39
ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 25.905
Coil coiled-coil 0
Coil coiled-coil 0
HMMPanther Lysyl-tRNA synthetase, class II, C-terminal 3.1e-209
HMMPanther Aminoacyl-tRNA synthetase, class II (D/K/N)-like 3.1e-209
Gene3D Nucleic acid-binding, OB-fold 5.5e-36
Gene3D no description 5.1e-112
HMMPfam Aminoacyl-tRNA synthetase, class II (D/K/N) 1.2e-87
HMMPfam Nucleic acid binding, OB-fold, tRNA/helicase-type 5e-10
FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38
FPrintScan Lysyl-tRNA synthetase, class II, C-terminal 9.5e-38

See the detailed result >

AT3G11710.1

Model type
Protein coding
Short Description
lysyl-tRNA synthetase 1
Computational Description
lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-12-O04 introduced

  • F17838 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found