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  3. RAFL06-13-A09

RAFL06-13-A09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07558)

full reading [+] show sequence

Nucleotide sequence: RAFL06-13-A09 - full reading 
AATAATATCT AAACCAAAAG CCAAAACACA CAAAAACAGA GCCATGTTCT 
TCAAGCTCTT TACCATCTTC TTCTTCTTCA TCATCCTACT CTCTAAACCC 
CTAAACTCCT CTTCTCAAAG TCTCAACTTC ACTTACAATA GCTTCCATCG 
TCCACCAACT AACATATCCA TCCAAGGAAT TGCCACAGTC ACATCCAACG 
GTATCTTGAA GCTAACAGAC AAAACGGTTA TAAGTACAGG TCACGCTTTC 
TACACCGAAC CAATCCGGTT TAAAGATTCA CCAAACGATA CTGTCTCGTC 
CTTCTCAACA ACCTTCGTCA TCGGTATCTA CTCTGGGATC CCGACAATTA 
GCGGCCATGG CATGGCCTTT TTCATCGCTC CTAACCCCGT CCTCTCATCA 
GCCATGGCTA GCCAATACCT TGGTCTCTTC AGCAGCACCA ACAACGGTAA 
CGATACGAAT CATATACTCG CTGTCGAATT TGATACGATC ATGAACCCTG 
AGTTTGATGA TACGAACGAT AACCATGTGG GAATCAATAT AAATAGTTTG 
ACCTCGGTTA AAAGCTCGCT GGTTGGGTAT TGGGATGAGA TCAATCAGTT 
TAATAATCTG ACTTTGATAA GTCGTAAACG GATGCAAGTT TGGGTTGACT 
ATGATGATCG TACTAATCAA ATCGATGTAA CTATGGCTCC GTTTGGTGAG 
GTTAAACCTA GGAAAGCGCT TGTTTCTGTT GTTAGAGATC TATCTTCTGT 
TTTCTTGCAA GACATGTACT TAGGTTTCTC GGCTGCGACT GGTTATGTTC 
TGTCAGAACA TTTTGTTTTT GGGTGGAGTT TCATGGTGAA AGGGAAGACA 
GCTCCGCCGT TGACTTTATC GAAAGTTCCG AAGTTTCCGA GGGTCGGGCC 
AACGAGTTTA CAGAGGTTTT ATAAGAACAG GATGCCGTTA TTTTCCCTCT 
TGTTGATTCC GGTCTTGTTT GTTGTCTCGC TCATCTTCCT CGTGCGCTTT 
ATCGTGAGGA GGAGGAGAAA GTTCGCGGAG GAGTTCGAAG ATTGGGAAAC 
AGAGTTTGGG AAGAACCGGT TAAGGTTTAA GGACTTGTAC TATGCTACAA 
AAGGGTTCAA GGATAAGGAC CTTCTTGGAT CGGGTGGGTT TGGTAGGGTT 
TATAGAGGTG TCATGCCGAC AACGAAGAAA GAGATCGCGG TGAAGAGAGT 
GTCGAATGAA TCTCGACAAG GGTTGAAAGA GTTTGTTGCT GAGATTGTGA 
GTATTGGTAG GATGAGTCAT CGGAACTTAG TTCCTCTCTT GGGTTATTGT 
CGTCGTAGAG ACGAGCTTCT TTTGGTGTAT GATTACATGC CTAATGGTAG 
CTTAGACAAG TATTTGTACG ATTGTCCTGA GGTAACACTT GATTGGAAAC 
AGAGGTTTAA TGTAATTATA GGTGTGGCCT CTGGCTTATT CTATCTCCAC 
GAGGAATGGG AACAAGTGGT GATTCACCGC GACATCAAAG CCAGCAACGT 
TTTGTTAGAC GCGGAGTACA ACGGAAGACT CGGGGATTTT GGTTTAGCTC 
GGTTGTGCGA TCACGGTTCG GATCCTCAAA CTACGCGTGT TGTTGGAACT 
TGGGGATACC TAGCCCCGGA TCATGTCAGA ACAGGACGGG CCACAACCGC 
TACTGATGTT TTTGCGTTTG GGGTGCTCCT ACTAGAAGTG GCTTGCGGTA 
GGCGACCTAT AGAGATTGAG ATCGAGAGTG ATGAGAGCGT GTTGCTAGTG 
GATTCGGTTT TTGGTTTTTG GATAGAGGGA AACATCTTGG ATGCTACGGA 
TCCGAATCTA GGATCGGTCT ATGACCAAAG AGAAGTCGAA ACGGTATTGA 
AGCTAGGGTT GTTATGCTCT CACTCCGACC CACAAGTTAG ACCAACAATG 
AGACAAGTGC TACAGTATCT AAGGGGAGAT GCAACGTTAC CAGATTTGTC 
GCCGTTGGAC TTCCGTGGGA GTGGGAAAAT GTTGGGAATG AACCACAGAT 
TTAGTGAGTC ATGCACATTT TCCAGTGGAT CTTCGATTGC TTATTCTATA 
GTCTCTGGCG GGAGGTGATT TTGGAATATT AGAACATGTA TATGTCTTAC 
ATAGTTACAT TACATATGTA GAAAGAATGT TTTTGCACAT GATAGAGACC 
ATGTTGATAT ATATCATTGA AACTTTATC

Gene models with high sequence identity

  1. AT4G02410.1 [+] show detail - Concanavalin A-like lectin protein kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 4.3e-79
superfamily Concanavalin A-like lectin/glucanase 1.4e-78
ProfileScan Protein kinase, catalytic domain 37.63
HMMPfam Legume lectin, beta chain 1.4e-78
HMMPfam Serine/threonine-protein kinase-like domain 6.1e-47
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
PatternScan Legume lectin, beta chain, Mn/Ca-binding site 0
HMMSmart Serine/threonine-protein kinase domain 2.5e-34
HMMSmart Tyrosine-protein kinase, catalytic domain 7.9e-29
Gene3D Concanavalin A-like lectin/glucanase, subgroup 1e-73
Gene3D no description 3.7e-23
Gene3D no description 1.4e-48
HMMPanther SERINE/THREONINE-SPECIFIC KINASE LIKE PROTEIN 3.1e-260
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.1e-260

See the detailed result >

AT4G02410.1

Model type
Protein coding
Short Description
Concanavalin A-like lectin protein kinase family protein
Computational Description
Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Legume lectin, beta chain, Mn/Ca-binding site (InterPro:IPR019825); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G02420.1); Has 115275 Blast hits to 113889 proteins in 4562 species: Archae - 89; Bacteria - 12949; Metazoa - 42488; Fungi - 9587; Plants - 33653; Viruses - 400; Other Eukaryotes - 16109 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-A09 introduced

  • F01021 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found