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  3. RAFL06-13-C10

RAFL06-13-C10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17197)

full reading [+] show sequence

Nucleotide sequence: RAFL06-13-C10 - full reading
GGAGAGGAAC AACAAGAAAA GTCAAAACGT TGAAGCTTTC TCGAATAACG 
CCTTCTTTAG TTTACAGTCT CTCGTTGCGG GTCTTATCTT CTTCTTCTTC
TTCCCTCTTT CGTCTGCTCT ATATTATGAC CAGATTCAAA ATTGCGTAGC
GTACTAATTC AATATAGAGA GAAGTTAGAT CAAAAGAAGA ACACGAAACT
CTGACTGTGT CTCTCTTTCT CTTCGTGTGT TTCTATATTT ATATATAAAA
AGACAAGATC TCTGGTCTGG AATTAGAAGA ATCTTATTTG GGGTTTTTTC
TTAGGATTAA GCTCTAATGG CAGATCAAGT AAAAGAGCGG ACTTTAGAGG
AGACCTCTAC GTGGGCAGTT GCTGTTGTTT GCTTTGTCTT ACTCTTTATT
TCGATTGTCC TCGAACATTC TATTCACAAA ATTGGAACCT GGTTTAAAAA
GAAGCACAAG CAGGCTCTTT TTGAAGCTCT TGAAAAGGTC AAAGCAGAGC
TTATGCTGTT GGGATTCATA TCACTACTAC TCACAATTGG ACAAACACCA
ATCTCAAATA TCTGCATCTC CCAGAAAGTT GCGTCAACAA TGCACCCTTG
CAGTGCTGCT GAAGAAGCTA AAAAATACGG CAAGAAAGAC GCCGGAAAGA
AAGATGATGG AGATGGAGAT AAACCCGGTC GAAGACTTCT TCTTGAGTTA
GCTGAATCTT ATATCCATAG AAGAAGTTTA GCCACCAAAG GCTATGACAA
ATGTGCAGAG AAGGGGAAAG TGGCTTTTGT ATCTGCTTAT GGAATCCACC
AGCTGCATAT ATTCATCTTC GTGCTCGCGG TTGTTCATGT TGTTTACTGC
ATTGTTACTT ATGCTTTCGG AAAGATCAAG ATGAGGACGT GGAAGTCGTG
GGAGGAAGAG ACAAAGACAA TAGAGTATCA GTATTCCAAC GATCCTGAGA
GGTTCAGGTT TGCGAGGGAC ACATCTTTTG GGAGAAGACA TCTCAATTTC
TGGAGCAAGA CGAGAGTCAC ACTATGGATT GTTTGTTTTT TTAGACAGTT
CTTTGGATCT GTCACCAAAG TTGATTACTT AGCACTAAGA CATGGTTTCA
TCATGGCGCA TTTTGCTCCC GGTAACGAAT CAAGATTCGA TTTCCGCAAG
TATATTCAGA GATCATTAGA GAAAGACTTC AAAACCGTTG TTGAAATCAG
TCCGGTTATC TGGTTTGTCG CTGTGCTATT CCTCTTGACC AATTCATATG
GATTACGTTC TTACCTCTGG TTACCATTCA TTCCACTAGT CGTAATTCTA
ATAGTTGGAA CAAAGCTTGA AGTCATAATA ACAAAATTGG GTCTAAGAAT
CCAAGAGAAA GGTGATGTGG TGAGAGGCGC CCCAGTGGTT CAGCCTGGTG
ATGACCTCTT CTGGTTTGGC AAGCCACGCT TCATTCTTTT CCTTATTCAC
TTGGTCCTTT TTACGAATGC ATTTCAACTT GCATTCTTTG CCTGGAGTAC
GTATGAATTC AATCTCAATA ATTGTTTCCA TGAAAGCACT GCAGATGTGG
TCATTAGACT TGTAGTTGGA GCTGTTGTGC AGATACTTTG CAGCTATGTG
ACTCTTCCAC TCTATGCACT TGTTACTCAG ATGGGTAGTA AAATGAAGCC
AACAGTATTC AACGATAGAG TAGCCACGGC ATTAAAGAAG TGGCATCACA
CTGCAAAGAA CGAGACGAAA CACGGAAGAC ACTCGGGATC CAACACACCT
TTCTCTAGCC GTCCAACCAC ACCAACACAT GGCTCATCTC CAATCCATCT
CCTTCACAAT TTCAATAACC GGAGCGTTGA AAATTACCCA AGTTCTCCTT
CTCCTAGATA CTCTGGTCAT GGTCATCATG AACACCAATT TTGGGATCCT
GAGTCTCAAC ACCAAGAAGC TGAAACTTCC ACACATCATT CTCTTGCGCA
TGAAAGCTCA GAACCTGTTC TTGCATCTGT GGAACTTCCT CCTATAAGGA
CTAGCAAAAG CTTAAGAGAT TTTTCTTTTA AGAAATGATG ATTCTTGTTT
GCTATATTTG ATTTCGTACA GTGGGAAATT TGTCATATGA AAATAATTTC
TTGTACATTA AAAA

Gene models with high sequence identity

  1. AT1G11310.1 [+] show detail - Seven transmembrane MLO family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G11310.1

Model type
Protein coding
Short Description
Seven transmembrane MLO family protein
Curator Summary
A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter.
Computational Description
MILDEW RESISTANCE LOCUS O 2 (MLO2); FUNCTIONS IN: calmodulin binding; INVOLVED IN: defense response to fungus, incompatible interaction, cell death, response to fungus, negative regulation of defense response, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mlo-related protein (InterPro:IPR004326); BEST Arabidopsis thaliana protein match is: Seven transmembrane MLO family protein (TAIR:AT1G61560.1); Has 559 Blast hits to 538 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 551; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-C10 introduced

  • F02746 - Specific phenotypes were NOT observed.
  • F16950 - rosette leaf::abnormal / whole plant::decreased height / whole plant flowering stage::premature

Mutant lines with disrupted or induced

4 mutant lines found