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  3. RAFL06-13-H11

RAFL06-13-H11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03155)

full reading [+] show sequence

Nucleotide sequence: RAFL06-13-H11 - full reading 
AAGCAAAAGA AGAAGAAGAA GAAGTAATGG CTTCCTCTAT GCTCTCCTCT 
GCCGCTGTGG TTACCTCCCC GGCTCAAGCC ACCATGGTCG CTCCATTCAC 
TGGTTTGAAG TCATCCGCTT CTTTCCCGGT CACCCGCAAG GCCAACAACG 
ACATTACTTC CATCACAAGC AATGGGGGAA GAGTTAGCTG CATGAAGGTG 
TGGCCACCAA TCGGAAAGAA GAAGTTTGAG ACTCTATCTT ACCTCCCTGA 
CCTTACTGAC GTCGAATTGG CTAAGGAAGT TGACTACCTT CTCCGCAACA 
AATGGATTCC TTGTGTTGAA TTCGAGTTGG AGCACGGATT TGTGTACCGT 
GAGCACGGAA ACACTCCCGG ATACTACGAT GGACGGTACT GGACAATGTG 
GAAGCTTCCA TTGTTCGGAT GCACCGACTC CGCTCAAGTG TTGAAGGAAG 
TTGAAGAATG CAAGAAGGAG TACCCGGGCG CCTTCATTAG GATCATCGGA 
TTCGACAACA CCCGTCAAGT CCAATGCATC AGTTTCATTG CCTACAAGCC 
CCCAAGCTTC ACTGATGCTT AAATCCTTTT CTGGAATATT CAATGTTGAC 
TATCCGGAAC CCAATTTTGT ATGGTCAATG TAAATTTAAG TAATTATTTT 
GC

Gene models with high sequence identity

  1. AT5G38430.1 [+] show detail - Ribulose bisphosphate carboxylase (small chain) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
FPrintScan Ribulose bisphosphate carboxylase, small chain 2.6e-75
Gene3D Ribulose bisphosphate carboxylase, small chain 1e-54
superfamily Ribulose bisphosphate carboxylase, small chain 3.2e-53
HMMPfam Ribulose bisphosphate carboxylase, small chain 3.4e-41
HMMPfam RbcS 5.9e-21

See the detailed result >

AT5G38430.1

Model type
Protein coding
Short Description
Ribulose bisphosphate carboxylase (small chain) family protein
Computational Description
Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-H11 introduced

  • F06124 - rosette leaf::dark green / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::increased size / stem::increased thickness / whole plant::increased height / stem::abnormal / root::present in greater numbers in organism
  • F07109 - Specific phenotypes were NOT observed.
  • F08518 - Specific phenotypes were NOT observed.
  • F10239 - Specific phenotypes were NOT observed.
  • F13310 - Specific phenotypes were NOT observed.
  • F13926 - Specific phenotypes were NOT observed.
  • F14315 - seed::increased size / seed::increased length
  • F21642 - rosette leaf::abnormal / stem::abnormal
  • F29422 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found