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  3. RAFL06-13-I03

RAFL06-13-I03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03160)

full reading [+] show sequence

Nucleotide sequence: RAFL06-13-I03 - full reading 
AAAATATTAT TTAAATGTTA ATGTTGTTCT CTCGAATCAT TCCTTAAGAA 
AGATTTTCAC TTTCCAATTT GCTTCACTGT CTTGTCGATT CTGCTTCTCC 
AAAAAATTTC TTCTTTAGTT CTGAGTTTTT CTCTGTTCTG AAAAACCCCA 
AATTTTGTTT TTTTTGGCCA TTCAAAATTT CAGAAGAAGG CGATACAAAA 
TCGTCTTTGA ATTCTCTTTG TTTATGATCT GTTCAAGTAA AGGAACGGTC 
GTAATTGCTA CTAGAAGCTC ATTTCCCAGA TTACTAAACC GGATTCAAAA 
TCGAAATGAT GTTCCGATTA GTGTCATAGC TACTCGACGA TCATCAATGT 
CGGTGGAGGC GTTTCCGATG AGGTTAAAAT CATCACAGAA GAAGAGGAAG 
ATGAACATTG GTTGCGGTGT TTCCCCTTCT TCGCCGACGA CGACGGTGGT 
AGATGAGGAA GTAGCCATTA GGCGGAAATT GGCAATGAGA CGGGTTTTGG 
AGGATAACGG TGGCGATGGA AGCTCCGTCA GAGATTTCTC GCTATTCACG 
ACCAAGAGAG GTGACACGTT GTTCACTCAG TCATGGACTC CTGTTGACTC 
CGCTAAGAAC AGGGGACTTG TTGTTCTGCT TCATGGTCTG AACGAACACA 
GTGGCAGGTA TAGTGATTTT GCAAAGCAGC TAAATGTAAA TGGATTCAAG 
GTCTATGGAA TAGATTGGAT CGGTCATGGT GGAAGCGATG GACTTCATGC 
TTACGTTCCT TCTCTTGATT ATGCTGTCGC TGATTTGAAA TCGTTTATTG 
AGAAGGTAAT TGCGGAAAAC CCGGGATTGC CCTGTTTCTG CATTGGCCAC 
TCAACAGGAG GAGCCATCAT CTTAAAGGCT ATGCTAGATG CAAAGATTGA 
AGCTCGAGTT TCAGGGATTG TGCTAACTTC ACCCGCAGTT GGAGTCCAAC 
CAACTTATCC TATCTTCGGC GTAATTGCAC CATTCCTCTC GTTCCTCATA 
CCGAGATATC AGTTAAGTGC TGCGAAAAAG AAAATAATGC CGGTTTCTCG 
TGACCCGGAA GCTCTATTGG CTAAATACTC TGACCCGCTA GTCTACACTG 
GATTTATCCG AGCAAGAACC GGTAACGAGA TCCTTAGACT TGGTGCTCAT 
TTACTGCAGA ATCTGAACAG AATCAAGGTT CCGTTTCTTG TGATGCACGG 
CACAGCTGAT ACAGTTACTG ATCCTAAAGG TACTCAGAAG CTATACAATG 
AGGCTTCCTC ATCCGATAAG TCGATCAAGC TGTACGACGG GTTGTTACAC 
GATCTGCTCT TTGAACCAGA ACGGGAAACT ATAGCTGGAG TCATATTGGA 
TTGGCTAAAC CGGCGGGTTT AAATTCCTCA AACCAAATGT AGCACAGTTC 
CTTACTCCTT AGGTAATATA GAGGGATATG CGAAAGACAT AATCAATAGT 
TCCTCTGTTT CTGTCGATTG ATCTCGACAC TATTTTGACA TTACGCACAC 
TTTTATTGTA ATGAATATAC GATGTTGTAA CC

Gene models with high sequence identity

  1. AT1G18360.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther LYSOPHOSPHOLIPASE 4.3e-141
HMMPanther PHOSPHOLIPASE-RELATED 4.3e-141
Gene3D no description 7e-31
HMMPfam Hydrolase_4 1.6e-26
superfamily alpha/beta-Hydrolases 8.6e-48

See the detailed result >

AT1G18360.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73480.1); Has 6456 Blast hits to 6448 proteins in 1759 species: Archae - 38; Bacteria - 4736; Metazoa - 147; Fungi - 149; Plants - 444; Viruses - 63; Other Eukaryotes - 879 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-I03 introduced

  • F13049 - rosette leaf::increased size / rosette leaf::abnormal / stem::abnormal / whole plant::decreased height / stem internode::decreased length / root::present in greater numbers in organism / root::abnormal / rosette leaf::decreased size / rosette leaf::abnormal / stem::decreased thickness / stem internode::decreased length

Mutant lines with disrupted or induced

2 mutant lines found