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RAFL06-13-I05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03161)

full reading [+] show sequence

Nucleotide sequence: RAFL06-13-I05 - full reading 
AGAGCTCTCT CTCAGTCGAA AACAATGGCG TCTTCTTCAG CGACGCTCTC 
TCTCTGCTCT ACTTTCTCTG CTCATTGCAA TGTCAATTCT CGCCGTTCTA 
GCACTATCCT CTGTTCTCTC TCTAAACCTT CGCTTAATTT GGCTAAACCT 
CTGACTGGAT TTCTTTCTCC TTCCACTGCG TCGACGTCTC GAACCGCATT 
CACCGTCGCT CCGAAATTCG CGGAATCAGT CGTCGAAGCT GAACCGGAGA 
CTACCGATAT CGAAGCTGTG GTGGTTTCCG ATGTTTCGGA GGTTACTGAG 
GAAAAAGCTA AACGAGAAGA GATTTTCGCT GTTATTATGG TTGGTGGACG 
CCAATACATA GTGTTTCCAG GGAGATATCT CTACACTCAG AGGCTAAAAG 
ATGCAAATGT TGATGACCAG ATTGTTCTCA ACAAAGTGTT GCTTGTTGGA 
ACAAAGACAC ACACTTACAT TGGCAAGCCG GTTGTGACCA ATGCCACTGT 
ACATGCTGTT GTGGAAAGTC AAGGTTTGAA TGATAAAGTG GTAGTCTTCA 
AGTACAAGCC TAAGAAGAAG TACCGTAGAA ATATCGGTCA CAGACAGCCG 
AATACGAGGA TTAGGATTAC CGGAATCACA GGGTATGAAG AGTATCCAGC 
CTCGCCCAAT GTTGCAGTTG GAGAAGTAAA TCTTTGACAC AAAATGTTTC 
TTGAATGTTA AAATTTTTCT GATCTTCTCT ATGTAATTTT GTAAGGACCC 
TGGTCATTTC ATTTCTGCTG AGATTCCTTT TATTAATATG TACCTTTTGC 
C

Gene models with high sequence identity

  1. AT1G35680.1 [+] show detail - Ribosomal protein L21
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ribosomal protein L21, conserved site 0
HMMTigr Ribosomal protein L21 2e-32
HMMPfam Ribosomal protein L21 1.3e-31
HAMAP Ribosomal protein L21 22.652
HMMPanther Ribosomal protein L21 2.3e-32

See the detailed result >

AT1G35680.1

Model type
Protein coding
Short Description
Ribosomal protein L21
Computational Description
Ribosomal protein L21; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cold, translation; LOCATED IN: ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: Ribosomal protein L21 (TAIR:AT4G30930.1); Has 7103 Blast hits to 7101 proteins in 2544 species: Archae - 0; Bacteria - 5138; Metazoa - 96; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 1731 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-I05 introduced

  • F03414 - Specific phenotypes were NOT observed.
  • F04839 - seed::increased size / seed::increased length
  • F05622 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism / fruit::decreased length / stem::present in greater numbers in organism
  • F06246 - cauline leaf::abnormal / whole plant::decreased height
  • F09202 - seed::increased size / seed::increased length
  • F10246 - Specific phenotypes were NOT observed.
  • F11526 - Specific phenotypes were NOT observed.
  • F14832 - Specific phenotypes were NOT observed.
  • F16220 - seed::increased size
  • F18840 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

16 mutant lines found