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RAFL06-13-J20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87587)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-13-J20 - 5 prime EST 
GAACTCACAG TTCCAAACAC ACAAAAAACA CAAGATCTAA AAAAAAAAGC 
TTTTATCATT TAGAAAAATT TGGTTTCGAA TTTCTTCGAA GAGTGAAAAT 
GGCGTCTCAT CAAGAACAGA GTTACAAAGC TGGTGAAACC AGAGGCAAGG 
CTCAGGAGAA AACTGGGGAA GCTATGGGAA CGATGGGGGA CAAAACACAA 
GCAGCTAAGG ACAAAACTCA AGAGACAGCC CAGTCAGCCC AACAAAAGGC 
TCATGAAACA GCTCAGTCAG CTAAAGACAA GACGTCTCAA GCTGCACAAA 
CGACTCAAGA GAGAGCTCAA GAGTCCAAAG ACAAGACAGG AAGCTACATG 
TCGGAAACTG GAGAAGCAAT CAAGAACAAG GCACACGATG CAGCTGAATA 
TACCAAAGAG ACTGCAGAAG CAGGTAAGGA GAAGACCAGT GGGATCTTGG 
GCCAGACCGG TGAGCAGGTG AAACACATGG CTATGGGAGC TACTGATGCG 
GTGAAGCACA CTTTAGGGCT TCGCACTGAT GAAGGAAACA AAGAACATGT 
TTCTTCAGCT CCAAGTACTA CTACTACGAC CACTACTCGT GAGACACAGA 
GGAAGTGAAG AGGATAAATA TTTGTTTCGT GTTCGTGGTT TTCATGTTTG 
TTTGCTTTGA TTAGTGTTTG TTGCGTT

Gene models with high sequence identity

  1. AT1G52690.2 [+] show detail - Late embryogenesis abundant protein (LEA) family protein
    E-value: 0; Score: 99.85

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-13-J20 - 3 prime EST 
AAAAGAAAAC CATTACATGA TAATACGTAG AAGTACATTC AAACCCAATA 
AACAACAACA AGGATCGGCA TAACCTCACG AACGCAACAA ACACTAATCA 
AAGCAAACAA ACATGAAAAC CACGAACACG AAACAAATAT TTATCCTCTT 
CACTTCCTCT GTGTCTCACG AGTAGTGGTC GTAGTAGTAG TACTTGGAGC 
TGAAGAAACA TGTTCTTTGT TTCCTTCATC AGTGCGAAGC CCTAAAGTGT 
GCTTCACCGC ATCAGTAGCT CCCATAGCCA TGTGTTTCAC CTGCTCACCG 
GTCTGGCCCA AGATCCCACT GGTCTTCTCC TTACCTGCTT CTGCAGTCTC 
TTTGGTATAT TCAGCTGCAT CGTGTGCCTT GTTCTTGATT GCTTCTCCAG 
TTTCCGACAT GTAGCTTCCT GTCTTGTCTT TGGACTCTTG AGCTCTCTCT 
TGAGTCGTTT GTGCAGCTTG AGACGTCTTG TCTTTAGCTG ACTGAGCTGT 
TTCATGAGCC TTTTGTTGGG CTGACTGGGC TGTCTCTTGA GTTTTGTCCT 
TAGCTGCTTG TGTTTTGTCC CCCATCGTTC CCATAGCTTC CCCAGTTTTC 
TCCTGAGCCT TGCCTCTGGT TTCACCAGCT TTGTAACTCT GTTCTTGATG 
AGACGCCATT TTCACTCTTC GAAGAAATTC GAAACCAAAT TTTTCTAAAT 
GA

Gene models with high sequence identity

  1. AT1G52690.2 [+] show detail - Late embryogenesis abundant protein (LEA) family protein
    E-value: 0; Score: 99.86

AT1G52690.2

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT3G15670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-J20 introduced

  • F11346 - Specific phenotypes were NOT observed.
  • F21811 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found