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  3. RAFL06-13-M02

RAFL06-13-M02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03174)

full reading [+] show sequence

Nucleotide sequence: RAFL06-13-M02 - full reading 
CTCACTCACT ATTTTCACAT TCTCTTCTCT CTCGATATCA TCTAAATCTC 
TCTCGATCTC AATTTCGCAA AATGGCTGAC AAGAAGATCA GAATCGGAAT 
CAACGGTTTC GGAAGAATCG GTCGTTTGGT TGCTAGAGTT GTTCTTCAGA 
GGGATGATGT TGAGCTCGTC GCTGTTAACG ATCCTTTCAT CACCACCGAG 
TACATGACAT ACATGTTTAA GTATGACAGT GTTCACGGTC AGTGGAAGCA 
CCATGAGCTT AAGGTGAAGG ATGACAAAAC TCTTCTCTTC GGTGAGAAGC 
CAGTCACTGT TTTCGGCATC AGGAACCCTG AGGACATCCC ATGGGGTGAG 
GCTGGAGCTG ACTTTGTTGT TGAGTCTACT GGTGTCTTCA CTGACAAAGA 
CAAGGCTGCT GCTCACTTGA AGGGTGGTGC TAAAAAGGTT GTCATCTCTG 
CCCCAAGCAA AGATGCGCCC ATGTTCGTTG TTGGTGTCAA CGAGCACGAG 
TACAAGTCTG ACCTTGACAT TGTTTCCAAC GCTAGTTGCA CCACTAACTG 
CCTTGCTCCT CTTGCCAAGG TTATTAATGA CAGGTTTGGC ATTGTTGAGG 
GACTCATGAC CACTGTCCAC TCTATCACTG CTACTCAGAA GACAGTTGAT 
GGTCCATCAA TGAAGGACTG GAGAGGTGGA AGAGCTGCTT CCTTCAACAT 
TATTCCTAGC AGCACTGGTG CCGCCAAGGC TGTTGGGAAA GTGTTGCCAT 
CCCTCAATGG AAAATTGACC GGAATGTCTT TCCGTGTTCC AACCGTTGAT 
GTCTCAGTTG TTGATCTCAC CGTTAGACTT GAGAAAGCTG CAACATACGA 
CGAAATCAAG AAGGCCATCA AGGAGGAATC TGAAGGCAAA ATGAAGGGAA 
TTTTGGGATA CACTGAGGAT GATGTTGTGT CTACCGACTT TGTTGGTGAC 
AACAGGTCAA GCATTTTCGA TGCCAAGGCT GGGATTGCAT TGAGCGACAA 
GTTTGTGAAG TTGGTGTCAT GGTACGACAA CGAATGGGGT TACAGTTCTC 
GTGTCGTTGA CCTTATCGTT CACATGTCAA AGGCCTAAGC TTACACCGGC 
GAGAGTTTGT GTGTGGTTGA GTTCGTACTG TTCTGAATAA AAAAAAGGAG 
AAAAGAAAAC TCGAGTTGTT ATGTTTTTTC ACTGATTCCA TGCGCAGTCA 
TGAGAGTTTG TAGCTTTTGT CTTTTTGCTT TCTCTTAATG TTTCCCTGCT 
TTATTTACTG AAACCATTGG TTTGGTTTTT TATGTTAATT AAGTTTTTAG 
TTCAC

Gene models with high sequence identity

  1. AT1G13440.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
FPrintScan Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup 2.8e-49
Gene3D no description 2.2e-81
HMMSmart Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 4.2e-89
HMMTigr Glyceraldehyde-3-phosphate dehydrogenase, type I 2.1e-198
HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain 1.2e-74
HMMPfam Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain 3e-56
HMMPIR Glyceraldehyde 3-phosphate dehydrogenase family 1.7e-177
superfamily Glyceraldehyde-3-phosphate dehydrogenase-like 2.2e-83
superfamily NAD(P)-binding domain 1.6e-68
PatternScan Glyceraldehyde 3-phosphate dehydrogenase, active site 0
HMMPanther Glyceraldehyde 3-phosphate dehydrogenase subfamily 9.1e-271

See the detailed result >

AT1G13440.1

Model type
Protein coding
Short Description
glyceraldehyde-3-phosphate dehydrogenase C2
Computational Description
glyceraldehyde-3-phosphate dehydrogenase C2 (GAPC2); FUNCTIONS IN: copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity, zinc ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, gluconeogenesis, defense response to bacterium, glycolysis; LOCATED IN: in 8 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (TAIR:AT3G04120.1); Has 25382 Blast hits to 25370 proteins in 6374 species: Archae - 87; Bacteria - 10988; Metazoa - 2357; Fungi - 2864; Plants - 3864; Viruses - 0; Other Eukaryotes - 5222 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-M02 introduced

  • F07545 - Specific phenotypes were NOT observed.
  • F07745 - Specific phenotypes were NOT observed.
  • F09008 - seed::increased length
  • F16123_77 - Specific phenotypes were NOT observed.
  • F17640 - seed::increased size / seed::increased length
  • F18137 - Specific phenotypes were NOT observed.
  • F22910 - Specific phenotypes were NOT observed.
  • F23640 - Specific phenotypes were NOT observed.
  • F24605 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found