1. Home
  2. Full-length cDNAs
  3. RAFL06-13-N02

RAFL06-13-N02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07565)

full reading [+] show sequence

Nucleotide sequence: RAFL06-13-N02 - full reading 
AAAGTGAAAT GAAGTCAGCA ATTTCATCGT CACTCTTCTT CAATTCGAAG 
AATCTTTTAA ACCCTAATCC TCTTTCTCGC TTCATTTCTC TCAAATCTAA 
CTTCCTCCCT AAATTATCTC CGAGATCGAT CACTAGTCAC ACCTTGAAGC 
TCCCATCTTC GTCAACCTCA GCTTTAAGAT CCATTTCCTC TTCCATGGCT 
TCTTCTTTCA ACCCTGAACA AGCTAGAGTT CCCTCTGCTC TTCCTCTCCC 
AGCTCCTCCG TTGACCAAAT TCAACATCGG ATTGTGTCAG CTATCTGTTA 
CATCTGACAA AAAGAGAAAC ATCTCTCATG CTAAAAAAGC CATTGAAGAA 
GCTGCTTCTA AAGGAGCTAA GCTTGTTCTC TTACCCGAAA TTTGGAACAG 
TCCGTATTCC AATGATAGTT TTCCAGTTTA TGCGGAGGAG ATTGATGCAG 
GTGGTGATGC TTCTCCTTCA ACGGCAATGC TTTCTGAAGT TTCCAAACGT 
CTCAAGATTA CAATCATTGG TGGATCTATA CCAGAAAGAG TTGGAGATCG 
TTTGTATAAC ACTTGCTGTG TCTTTGGTTC CGATGGAGAG CTAAAAGCTA 
AGCATCGGAA GATACATTTA TTTGATATAG ACATTCCCGG GAAGATTACT 
TTTATGGAAT CCAAAACTCT TACTGCTGGA GAGACACCAA CAATCGTTGA 
CACAGATGTA GGGCGTATTG GAATAGGCAT CTGTTATGAT ATCAGGTTCC 
AGGAGTTAGC TATGATATAT GCTGCAAGAG GGGCTCATTT GCTGTGCTAC 
CCGGGAGCCT TTAACATGAC AACTGGACCA TTGCATTGGG AATTACTACA 
AAGGGCCAGG GCTACGGATA ATCAGTTATA TGTGGCGACA TGCTCACCTG 
CCAGAGATTC AGGAGCTGGC TACACTGCTT GGGGGCACTC AACACTCGTT 
GGGCCTTTTG GAGAAGTACT AGCAACGACT GAGCATGAGG AGGCCATTAT 
CATAGCAGAG ATTGATTACT CTATCCTTGA ACAACGAAGG ACTAGCCTTC 
CATTGAATAG GCAGCGGCGG GGAGATCTTT ACCAGCTTGT AGACGTACAG 
CGCTTAGACT CTAAATGAAC GCAGCAGTAA CTGTATATCT GAGAGATATT 
GCGAGTTGAG CACGATTTGG TTACTTACAA CTTCATGCAT GATCAGTCAT 
TTCTCCACAA CTTTGCTGAG ATATGTAAAA GAATAAAAAT CAAACTTTTG 
AGTTAAAATC GAACAAAGGC AAGTAAATTC TGCTTAGATA ATGTGAACTC 
CACCCACTTG CCATGTGTTT GTTGTTTATA AACTTCAATG CATTCTGATA 
ACG

Gene models with high sequence identity

  1. AT5G12040.1 [+] show detail - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther NITRILASE-RELATED 2.5e-71
ProfileScan Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 49.731
Gene3D Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 4.3e-83
HMMPfam Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3.3e-32
superfamily Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2.1e-84

See the detailed result >

AT5G12040.1

Model type
Protein coding
Short Description
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein
Computational Description
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein; FUNCTIONS IN: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, zinc ion binding; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (InterPro:IPR003010); BEST Arabidopsis thaliana protein match is: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (TAIR:AT4G08790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-13-N02 introduced

  • F03520 - Specific phenotypes were NOT observed.
  • F16248 - cauline leaf::epinastic / cauline leaf::abnormal / petal::abnormal / fruit::abnormal / fruit::decreased length / stem::abnormal / stem internode::decreased length / rosette leaf::abnormal / rosette leaf::increased width / rosette leaf::abnormal / stem::decreased thickness

Mutant lines with disrupted or induced

3 mutant lines found