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RAFL06-14-A20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87589)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-14-A20 - 5 prime EST 
GAACCATCTC TGAACTCATC TTTCAATCTC TCTTGATTCC AATCCATTCT 
TCTTCAAGTG CCGGGTTCTC GGGTCGGATC TTCTAAGTCT AGCTAGGGAT 
AATGGCTACT GTCACTACTC ATGCCTCGGC CTCGATTTTC CGACCTTGTA 
CTTCAAAGCC AAGATTCCTC ACCGGTTCTT CCGGTAGGTT GAACCGCGAC 
TTGTCGTTTA CATCGATCGG TTCATCGGCC AAAACGTCGT CGTTCAAGGT 
TGAAGCTAAG AAAGGAGAAT GGTTGCCCGG TTTGGCATCG CCTGATTATC 
TCACCGGCAG TCTTGCCGGT GACAATGGGT TTGACCCGTT GGGTCTAGCA 
GAGGATCCAG AGAACTTGAA ATGGTTCGTC CAGGCAGAGC TGGTCAACGG 
ACGATGGGCT ATGCTCGGTG TCGCTGGGAT GCTTTTGCCG GAAGTTTTCA 
CCAAGATCGG AATCATAAAT GTTCCTGAGT GGTACGATGC TGGGAAAGAG 
CAGTATTTTG CATCGTCGTC GACATTGTTC GTGATCGAGT TCATATTGTT 
TCATTACGTT GAGATCAGAC GGTGGCAAGA CATCAAGAAC CCAGGAAGTG 
TGAACCAAGA CCCTATCTTT AAGCAATACA GCTTACCTAA GGGTGAAGTT 
GGTTACCCTG GNGGAATCTT TAACCCGC

Gene models with high sequence identity

  1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
    E-value: 0; Score: 99.85

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-14-A20 - 3 prime EST 
AGTTCCTCTG TACATTGAAG ATTCCAAATT TGTTCATGGA GCTACAACGG 
TTCAACAATA ATTCAAGCTC AAAAACCAAG AACTCTAAGA TGAAACACAC 
TCACAGACAG ACATGAAAGT GATGGAAGAT AGATAGGTAT GAGATCATAA 
GTCTGTCTTC ACTCTTTAGT TGAAGGTTTG GACAATAGTG TTGTGCCATG 
GGTCAGACAA GTGCTGCAAC AGATTCTCAA ATGGTCCTTT TCCAGTCACA 
TTGTGTTGAA CCACAAACCC TAAGAATGCC AACATCGCCA ACCTCCCGTT 
TGCTAGCTCT TTCTCCTTGG CCTCTTGCGT AGGAGCAAAG TTAAGCGGGT 
TAAAGATTCC ACCAGGGTAA CCAACTTCAC CCTTAGGTAA GCTGTATTGC 
TTAAAGATAG GGTCTTGGTT CACACTTCCT GGGTTCTTGA TGTCTTGCCA 
CCGTCTGATC TCAACGTAAT GAAACAATAT GAACTCGATC ACGAACAATG 
TCGACGACGA TGCAAAATAC TGCTCTTTCC CAGCATCGTA CCACTCAGGA 
ACATTTATGA TTCCGATCTT GGTGAAAACT TCCGGCAAAA GCATCCCAGC 
GACACCGAGC ATAGCCCATC GTCCGTTGAC CAGCTCTGCC TGGACGAACC 
ATTTCAAGTT CTCTGGATCC TCTGCTAGAC CCAACGGGTC AAACCCATTG 
TCACCG

Gene models with high sequence identity

  1. AT3G47470.1 [+] show detail - light-harvesting chlorophyll-protein complex I subunit A4
    E-value: 0; Score: 100.00

AT3G47470.1

Model type
Protein coding
Short Description
light-harvesting chlorophyll-protein complex I subunit A4
Curator Summary
Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.
Computational Description
light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-14-A20 introduced

  • F00740 - Specific phenotypes were NOT observed.
  • F01204 - Specific phenotypes were NOT observed.
  • F01926 - Specific phenotypes were NOT observed.
  • F03929 - Specific phenotypes were NOT observed.
  • F04624 - Specific phenotypes were NOT observed.
  • F04628 - Specific phenotypes were NOT observed.
  • F10732 - Specific phenotypes were NOT observed.
  • F11017 - rosette leaf::increased size / rosette leaf::epinastic / cauline leaf::increased size / stem::increased thickness / whole plant::increased height / stem::present in fewer numbers in organism / stem internode::decreased length / root::present in greater numbers in organism
  • F12319 - Specific phenotypes were NOT observed.
  • F13238 - Specific phenotypes were NOT observed.
  • F13748 - seed::increased size
  • F13939 - seed::increased length
  • F15303 - Specific phenotypes were NOT observed.
  • F16113_77 - Specific phenotypes were NOT observed.
  • F17549 - seed::increased size
  • F18825 - Specific phenotypes were NOT observed.
  • F19013 - seed::increased size
  • F21744 - rosette leaf::increased length / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / stem::abnormal / stem::abnormal
  • F22324 - Specific phenotypes were NOT observed.
  • F22547 - seed::increased size / seed::increased length
  • F25450 - Specific phenotypes were NOT observed.
  • F26704 - seed::increased size / seed::increased length
  • F28235 - Specific phenotypes were NOT observed.
  • F28301 - Specific phenotypes were NOT observed.
  • F29008 - Specific phenotypes were NOT observed.
  • F29642 - Specific phenotypes were NOT observed.
  • F29941 - seed::increased size

Mutant lines with disrupted or induced

31 mutant lines found