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RAFL06-14-H08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03194)

full reading [+] show sequence

Nucleotide sequence: RAFL06-14-H08 - full reading 
GAGGCCGCGA GGACACTTAG AGACAAAGAG CAGCTCGTCA GCTCACCCGT 
CTGAAGTATC TCGCCAGCCG GCCCGTCTCA AGCAGCTCGT CAGATCACCC 
GTCTGAAGCA TCTCGTCAGC CGGTCCGTCT CAAGTAGCTC ATCAGCTCGC 
CCGTCTCAAG CAGCTCGTCA GCTCACCCGT CCGAAGTATC TCGCCAGCCG 
GCCCGTTAAA TTTTCCCGAT GGAGATTCTT CCGATTCCGG CGGAGAGTTT 
CAAGGTAGGA TTCATCGGAG CTGGTAAAAT GGCGGAGAGT ATAGCTAGAG 
GTGTGGTTGC TTCCGGTGTG CTTCCTCCTA ATCGTATATG CACCGCCGTT 
CACTCAAATC TCAATCGCCG TGATGTCTTC GAATCCTTTG GCGTCAATGT 
CTTCTCCACT AGCGAAGAAG TTGTTAAAGA AAGCGATGTT GTCATATTCT 
CTGTGAAACC TCAAGTTGTT AAGAAGGCTG TCACAGAATT AAAGTCGAAG 
CTTTCAAAGA ATAAGATTCT GGTTTCTGTT GCAGCTGGAA TCAAGTTGAA 
TGATTTACAG GAATGGTCTG GTCAAGATCG ATTCATAAGG GTGATGCCTA 
ATACACCTGC CGCTGTTGGT GAGGCAGCTT CAGTTATGAG CCTTGGCACA 
GGAGCAACGG AAGAGGATGG AGCAATTGTT GCTATGTTGT TTGGCGCGGT 
GGGGAAGATA TTGAAAGCTG ATGAGAAAAT GTTTGATGCT GTCACTGGTC 
TCAGTGGAAG TGGACCAGCA TACATATTTT TAGCAATTGA AGCTTTAGCC 
GATGGAGGAG TAGCTGCTGG TTTACCCCGA GAGCTTGCAT TGAGTTTAGC 
TTCACAGACC GTTCTTGGAG CTGCAACGAT GGTTAGCAAA ACTGGGAAGC 
ATCCAGGTGT GTTGAAAGAT GATGTTACCT CACCTGGCGG CACTACAATA 
GCCGGAGTTC ATGAACTAGA GAAAGGCTCT TTCCGGGCAA CACTTATGAA 
TGCAGTTGTT GCTGCAGCTA AACGAAGCCG CGAGCTCTCA CAGAGCTAAA 
TGATACATAT GTAGTTGCTG CTATTGTTTC ACCTCACAGA TTAATCAAAA 
TAAGGGTTAT GGGCCTTATG GCATTGCTTG TTTTTAGGCG AGAGTTTTAT 
CCCACTTGTC TTCGATGGTA GAGGTGAAGA TTATTTATCT AGACTATGAT 
GTATTAGTTC AGACAGAACT CAGATACTTT TCTATAATTC TTAATCTAAT 
AAAAATCACT TTCAGT

Gene models with high sequence identity

  1. AT5G14800.1 [+] show detail - pyrroline-5- carboxylate (P5C) reductase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Delta 1-pyrroline-5-carboxylate reductase 1.8e-127
Gene3D NAD(P)-binding domain 3.1e-05
HMMPanther Delta 1-pyrroline-5-carboxylate reductase 3.6e-111
HMMTigr Delta 1-pyrroline-5-carboxylate reductase 2.2e-97
HMMPfam NADP oxidoreductase, coenzyme F420-dependent 1.9e-22
superfamily NAD(P)-binding domain 4.7e-24
PatternScan Delta 1-pyrroline-5-carboxylate reductase 0

See the detailed result >

AT5G14800.1

Model type
Protein coding
Short Description
pyrroline-5- carboxylate (P5C) reductase
Curator Summary
Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.
Computational Description
pyrroline-5- carboxylate (P5C) reductase (P5CR); FUNCTIONS IN: pyrroline-5-carboxylate reductase activity; INVOLVED IN: response to salt stress, response to heat, proline biosynthetic process; LOCATED IN: cell wall, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NADP oxidoreductase, coenzyme F420-dependent (InterPro:IPR004455), NAD(P)-binding domain (InterPro:IPR016040), Delta 1-pyrroline-5-carboxylate reductase (InterPro:IPR000304); Has 7885 Blast hits to 7882 proteins in 2434 species: Archae - 115; Bacteria - 5234; Metazoa - 373; Fungi - 241; Plants - 70; Viruses - 0; Other Eukaryotes - 1852 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-14-H08 introduced

  • F09709 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found