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RAFL06-14-K01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87595)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-14-K01 - 5 prime EST 
GACCTATCTC ACTCTAAAAT CTCTCTCTGC CAATCTCATC TTCAACCTCT 
CTCTAACTCT CGTTTTCGAT TCTACAATGG CTGACAAGAA GATTAGGATC 
GGAATCAACG GATTCGGAAG AATTGGTCGT TTGGTTGCTA GAGTTGTTCT 
CCAGAGGGAC GATGTTGAGC TCGTCGCTGT CAACGACCCC TTCATCACTA 
CTGAGTACAT GACCTACATG TTCAAGTACG ACAGTGTTCA CGGTCAATGG 
AAACACAATG AACTCAAGAT CAAGGATGAG AAGACCCTTC TCTTCGGTGA 
GAAGCCAGTC ACTGTTTTCG GCATCAGGAA CCCTGAGGAT ATCCCATGGG 
CCGAGGCTGG AGCTGACTAC GTTGTTGAGT CTACTGGTGT CTTCACTGAC 
AAAGACAAGG CTGCAGCTCA CTTGAAGGGT GGTGCCAAGA AGGTTGTTAT 
CTCTGCCCCC AGCAAAGACG CTCCAATGTT TGTTGTTGGT GTCAACGAGC 
ACGAATACAA GTCCGACCTT GACATTGTCT CCAACGCTAG CTGCACCACT 
AACTGCCTTG CTCCCCTTGC CAAGGTTATC AATGACAGAT TTGGAATTGT 
TGAGGGTCTT ATGACTACAG TCCACTCAAT CACTGCTACT CAGAAGACTG 
TTGATGGGCC TTCAATGAA

Gene models with high sequence identity

  1. AT3G04120.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C subunit 1
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-14-K01 - 3 prime EST 
AAAACCATAA CGTTAACTCA ATATATCAAA AGCCAAAAAC AAAGGGCCTT 
CCAGTAAAAC ATCGGTCTAC AAACTCCCAT CACCTCACAT GAATGAGAAT 
TAAGAAAACC AAAAAAAAAA AAAGTTCCAA GTTCAAAGAA ATTTTATTCG 
AAAACGACAA ATTCAGACCA TAAAAGGGGA TGAACAGATG ACTTTCCACT 
CCCTATCATT CGAGATCTGC TTCTTAGCTT AGGCCTTTGA CATGTGGACG 
ATCAAGTCGA CCACACGGGA ACTGTAACCC CATTCGTTGT CGTACCATGA 
CACCAATTTC ACAAACTTGT CGCTCAATGC AATTCCAGCC TTGGCGTCAA 
AAATGCTCGA CCTGTTGTCG CCAACGAAGT CAGTTGA

Gene models with high sequence identity

  1. AT3G04120.1 [+] show detail - glyceraldehyde-3-phosphate dehydrogenase C subunit 1
    E-value: 0; Score: 99.74

AT3G04120.1

Model type
Protein coding
Short Description
glyceraldehyde-3-phosphate dehydrogenase C subunit 1
Curator Summary
encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS.
Computational Description
glyceraldehyde-3-phosphate dehydrogenase C subunit 1 (GAPC1); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, copper ion binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 11 processes; LOCATED IN: in 8 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde-3-phosphate dehydrogenase C2 (TAIR:AT1G13440.1); Has 25372 Blast hits to 25360 proteins in 6350 species: Archae - 71; Bacteria - 10995; Metazoa - 2358; Fungi - 2851; Plants - 3864; Viruses - 0; Other Eukaryotes - 5233 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-14-K01 introduced

  • F00320 - Specific phenotypes were NOT observed.
  • F04401 - Specific phenotypes were NOT observed.
  • F08915 - Specific phenotypes were NOT observed.
  • F12804 - rosette leaf::decreased size / rosette leaf::increased width / stem::abnormal / cauline leaf::epinastic / cauline leaf::dark green
  • F13046 - Specific phenotypes were NOT observed.
  • F16515 - Specific phenotypes were NOT observed.
  • F17043 - Specific phenotypes were NOT observed.
  • F19404 - Specific phenotypes were NOT observed.
  • F20105 - seed::increased size / seed::increased length
  • F20110 - Specific phenotypes were NOT observed.
  • F22947 - Specific phenotypes were NOT observed.
  • F23922 - seed::increased size / seed::increased length
  • F25415 - Specific phenotypes were NOT observed.
  • F27017 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

17 mutant lines found