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  3. RAFL06-15-D17

RAFL06-15-D17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03201)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-D17 - full reading 
CATTATTACA CCACCGTTGG CCTCCGACGA CGGCTCAAGC CTATCTTCGT 
CGCCGGCTTC TCCGATGGTT ACCAATCGCG TAGACGTCTT CTGGCACGAA 
GGAATGCTCC GACACGACGC CGTAGAAGGC GTCTTCGACA CTGGATACGA 
CCCTGGATTC CTCGACGTAT TGGAGAAGCA CCCGGAGAAC GCCGATCGCG 
TCAGGAACAT GCTTTCGATT CTCCGACGCG GTCCCATCGC TCCTCATGTC 
AATTGGTTTA CCGGTCTTCC AGCAATCGTT TCGGAGCTTC TAATGTTTCA 
CACTTCAGAG TACATTGAGA AGCTAGTGGA GGCAGATAAA TCAGGAGAAA 
GGTGTGAAAT TGCCGCAGGT ACTTTCATGA GCCCAGGCTC GTGGGAAGCT 
GCTCTTCTTG CAGCTGGAAC AACTCTTTCA GCAATGCAAC ATATTCTTGA 
TTGCCATGGG AAAATTGCAT ATGCTCTGGT ACGCCCACCA GGTCACCACT 
CACAGCCTAC TCAGGCTGAT GGGTATTGCT TCCTCAACAA CGCTGCTCTT 
GCTGTCAAGC TGGCATTGAA TTCGGGTTCT TGTTCCCGAG TTGCGGTTAT 
TGACATCGAT GTACATTATG GAAATGGCAC AGCTGAAGGG TTTTATACAT 
CTGATAAGGT TCTTACGGTG TCACTCCATA TGAACCATGG ATCATGGGGA 
TCGTCCCACC CGCAGAAAGG GTCGATTGAT GAACTTGGTG AAGACGTGGG 
ATTGGGTTAC AATCTGAATG TCCCTTTACC GAATGGCACG GGTGACCGGG 
GATATGAATA TGCCATGAAT GAGCTGGTGG TTCCTGCAGT TAGAAGGTTT 
GGACCCGATA TGGTTGTTCT CGTTGTTGGT CAAGACTCTA GCGCTTTTGA 
TCCAAACGGG AGACAAAGCC TGACAATGAA TGGATACAGA AGGATTGGGC 
AGATAATGAG GGGAGTTGCA GAGGAGCACA GCCATGGAAG GTTGCTTATG 
GTGCAAGAAG GCGGGTATCA TGTAACATAT GCAGCTTACT GCCTCCACGC 
CATGCTCGAA GGGGTGCTGA AGATTCCAGA ACCGCATCTA TCTGATCCGA 
TCGCTTATTA TCCCGAAGAA GAAGCTAATG CTGTTGCTGC TGTGGAGTCA 
ATCAAAACAT ATCACACCGA ATTTGTTCCA TTTCTCAGAG GAACTTGAAA 
ATGGGACGTA TGAATGAGTT TATGTTATTC CTCGTTGTCT TGTGACCTTT 
TGGAACACAG ATCCAAATCA ATCAGGTCAA ACCGTATATA TCAAAATACT 
TGTTGATCAA ACTATCTTTT GTATGAAAAC TTATTCACAC G

Gene models with high sequence identity

  1. AT1G08460.1 [+] show detail - histone deacetylase 8
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Histone deacetylase superfamily 6.9e-85
HMMPanther HISTONE DEACETYLASE-RELATED 1.5e-237
HMMPanther Histone deacetylase superfamily 1.5e-237
FPrintScan Histone deacetylase superfamily 0.000000000000039
FPrintScan Histone deacetylase superfamily 0.000000000000039
FPrintScan Histone deacetylase superfamily 0.000000000000039
superfamily Arginase/deacetylase 3.7e-92
HMMPfam Histone deacetylase superfamily 3.2e-78

See the detailed result >

AT1G08460.1

Model type
Protein coding
Short Description
histone deacetylase 8
Computational Description
histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-D17 introduced

  • F00602 - rosette leaf::dark green / rosette leaf::increased size
  • F02441 - Specific phenotypes were NOT observed.
  • F04503 - Specific phenotypes were NOT observed.
  • F08815 - seed::increased size / seed::increased length / seed::decreased width
  • F13616 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found