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  3. RAFL06-15-E15

RAFL06-15-E15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07572)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-E15 - full reading 
AAACTCTGTC GTTTTCCTCA GTCAGAGAGA CACAGAGAGA GAAAGAGAGA 
AGAAGAAGCA CTCTCATGGC GAACCAGCTT CTTCACCATC TTCCGATTCC 
TTTTCCTCTC CACCGTCACT TCTACCTCCT AAACGCCGCC GTTTTATAGC 
TTCTCCTCCC GAAAATGCTA AACCCACATT CCTCAAATCT CTCACCGACG 
CTTTTTTAGA TTCTTGTAGA GGAAGAGAAT ATTTTTAAGG AGGTTGTTTT 
CGATGGAGCA TTACGAGGTT CTTGAGCAAA TTGGGAAAGG TTCTTTTGGG 
TCAGCTCTTC TTGTGAGGCA TAAACATGAG AAGAAACTTT ATGTTTTGAA 
GAAAATTCGG TTAGCTAGGC AGACTGGTAG AACAAGAAGG TCTGCTCATC 
AAGAGATGGA ATTGATCTCA AAGATAAGGA ATCCATTTAT TGTGGAATAT 
AAAGATTCTT GGGTTGAGAA AGGTTGCTAT GTGTGCATTG TCATAGGCTA 
TTGCAAAGGC GGTGACATGG CCGAAGCAAT AAAGAAAGCC AACGGCGTAG 
AGTTCTCTGA AGAGAAACTC TGCAAGTGGC TGGTACAACT CTTAATGGCT 
CTTGAATACT TGCACGCCAG TCACATTCTC CATCGCGATG TCAAGTGTTC 
AAACATATTC TTGACAAAGG ATCAAGATAT ACGCCTAGGT GATTTCGGAC 
TTGCGAAGAT CTTGACATCT GATGACCTTG CTTCTTCAGT GGTTGGAACG 
CCGAGCTACA TGTGCCCTGA GCTTCTTGCT GATATTCCCT ACGGGTCAAA 
GTCGGACATT TGGTCGCTGG GTTGTTGTAT GTATGAGATG ACGGCGCTGA 
AACCGGCATT CAAAGCCTTT GACATGCAAG GTCTGATCAA CAGGATAAAC 
CGGTCCATCG TTGCTCCACT TCCTGCGCAA TATTCTACCG CCTTTCGCAG 
TCTCGTTAAA AGCATGCTCA GGAAGAATCC AGAACTCAGA CCAAGCGCTT 
CTGATCTTCT CAGACAGCCA CTACTTCAGC CCTACGTTCA AAAGGTTCTT 
CTCAAGCTGA GCTTCCGGGA ACACGATACA TTGCCATCTG AATCCGAAAG 
GAGAAGTAGC TATCCTCAGC AGAGAAAGCG TACTTCTGGC AAAAGTGTGA 
GCTTCGGTCC AAGCAGGTTC GGTGTTGACC AAGAAGATTC TGTTTCTTCT 
GTTAAACCCG TGCACACGTA TTTACACCGT CACAGGCCAG TGGATTTGTC 
TGCAAATGAC ACTAGTAGAG TGGTTGTTCG TAGACCCGCT GTTTCTTCAG 
TGGTTTCTAA CAGTTCAAAA TATGTGCCAG TGAGATCAAA CCAGCCTAAG 
AGTGGTGGTC TGCTGAAACC TGCGGTAGTG ACTCGTAGGG CCTCCTTACC 
TATCTCACAG AAACCTGCAA AAGGAACAAA AGACTCTCTA TACCACCCGA 
ACATCGGTAT ACTCCATCAG CTAAATTCTC CAGATGTGTC AGTAAACTCG 
CCAAGAATCG ACAGGATCAA GTTCCCGTTA GCTTCATATG AAGAAATGCC 
TTTCATTCCC GTTGTTCGCA AGAAGAAAGG ATCGTCCAGA GGATCATACA 
GCCCGCCTCC AGAGCCACCA CTAGACTGCT CAATAACAAA AGACAAATTC 
ACACTTGAAC CAGAACGAGA AACCAAAAGT GATTTGTCTG ATCAAAATGC 
AACTGCTGGA GCATCAAGTA GAGCTTCCTC AGGTGCATCA AGAAGACAAA 
GATTCGACCC TAGCTCATAT CGACAACGAG CTGAGGCACT TGAAGGACTA 
CTTGAATTCA GTGCAAGATT ACTTATAGAC GAGAGGTACG ATGAGCTGAA 
CGTGTTACTA AAACCATTTG GTCCGGGAAA GGTATCGCCA AGAGAAACCG 
CGATATGGTT GTCTAAAAGC TTCAAGGAAA GTAGTCCTAG TAACTTGGAA 
GAAGATTGAA AAACAGGGTT TTAACTCCTT AAAAGTTTTT GAGAGCATGA 
CGTTTCCACG ATTTGATAGA TAAATTGTTT GACTCTTAGG CTGTGTTCTT 
TGAAGCTAAC TCCTGTATCT GATACAATGA GACCAAAATA TACAGCTTTC 
TATTCTCTAT GTAATCCTTT ATTCAGTCTG AAACAAAAAA CATTTACG

Gene models with high sequence identity

  1. AT5G28290.1 [+] show detail - NIMA-related kinase 3
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMSmart Serine/threonine-protein kinase domain 1.9e-81
HMMSmart Tyrosine-protein kinase, catalytic domain 3.7e-13
ProfileScan Protein kinase, catalytic domain 45.022
superfamily Protein kinase-like domain 6.8e-83
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMPfam Serine/threonine-protein kinase-like domain 1.1e-60
Gene3D no description 6.3e-56
HMMPanther NIMA-RELATED PROTEIN KINASE, NEK 1.3e-131
HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 1.3e-131

See the detailed result >

AT5G28290.1

Model type
Protein coding
Short Description
NIMA-related kinase 3
Curator Summary
Encodes AtNek3, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.
Computational Description
NIMA-related kinase 3 (NEK3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 2 (TAIR:AT3G04810.2); Has 124194 Blast hits to 122056 proteins in 3852 species: Archae - 107; Bacteria - 14304; Metazoa - 45560; Fungi - 12271; Plants - 30693; Viruses - 504; Other Eukaryotes - 20755 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-E15 introduced

  • F19540 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found