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  3. RAFL06-15-H18

RAFL06-15-H18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03208)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-H18 - full reading 
TTGAACCAAA AAATATCTAA AATCACTAAA CCTATCTTCT TAACCAAAAG 
ATCAATAGAT TACAAAAATG CAGGGAGCTC TGTTTATCAA ACCAACTATT 
CTTCTTCCTC TTCCTTCTTC AGTTTCTTCT CCAAAACTCA CTTTTCTTCT 
TCCTCACGCA ACCAAAGCTT CAAGACTCTC ATCTCTCAGA TCAAACAACT 
CATCATCATC ATCATCCTTA ACGTCTGACC CTAACACCGT CGACTATAAC 
TCCTCCATCC TTTCTGTTTT TCCAGCTGAA GCATGCGAAG TAATCAGTGG 
ATACGCTTGT TCTGCTGATA TTTACCCTGA AGTCAAGCTC GATACAAAGC 
CCGTCTCACG TCCCGTGGCT TCAGAGCCCG TTGACAGAGA ATACGAAGAG 
TATAACAGCC CCAAAACGGT TTTCCGTGAA GAGGCCTGCG ATGATCTTGG 
AGGAGAATTC TGTGAACCTG ACTTTCAAAA AGATGCCAAC TAGAAGAAAC 
AAGATTTTAT GTCATGTGAA TATGTGTTTG TATTTCTACA AGTCTTTGTA 
ACCACTCCTT AATTTATGAT ATCTAGCTTC ACTACTTAAT CAAGATTGAT 
GTTATGG

Gene models with high sequence identity

  1. AT3G26740.1 [+] show detail - CCR-like
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G26740.1

Model type
Protein coding
Short Description
CCR-like
Curator Summary
transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant.
Computational Description
CCR-like (CCL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light regulated Lir1 (InterPro:IPR009856); Has 69 Blast hits to 69 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-H18 introduced

  • F09729 - Specific phenotypes were NOT observed.
  • F13025 - Specific phenotypes were NOT observed.
  • F16912 - Specific phenotypes were NOT observed.
  • F20150 - Specific phenotypes were NOT observed.
  • F21204 - seed::increased size / seed::increased length
  • F21205 - Specific phenotypes were NOT observed.
  • F26444 - Specific phenotypes were NOT observed.
  • F27507 - Specific phenotypes were NOT observed.
  • F30144 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found