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  3. RAFL06-15-I19

RAFL06-15-I19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03210)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-I19 - full reading 
ACTCGGCGAA TTCTCTCGAG AAAACAAACT GAATTTTTTT GATCGAAGAA 
GATCTAAAAA AAAAGATGGA GAGACGACAA GCGAAGATCC ATGTCTTTGT 
ATTGATAGGT CTAATTCTAT TGAATTCAAT CAATCAAATC TCATCTCTCT 
CTGTAACGGT GAACGACGAA GAATGTGTCC AAGAGTACGT CCTTTACGAA 
GGCGACACTG TTTCCGGTAA CTTCGTCGTC GTCGATCATG ATATCTTCTG 
GGGATCCGAT CATCCTGGTT TGGATTTCAC GGTGACGTCA CCAGCTGGGA 
ACATTGTACA GACTTTAAAG GGAACATCTG GAGATAAGTT TGAGTTTAAG 
GCTCCAAAAA GTGGAATGTA CAAATTTTGT TTCCACAATC CTTATTCTAC 
TCCTGAAACT GTCTCCTTTT ATATTCATGT TGGTCATATT CCTAATGAGC 
ATGACTTAGC CAAAGATGAA CATTTGGACC CGGTAAATGT TAAGATAGCT 
GAGTTGAGAG AGGCTTTGGA ATCTGTTGTT GCTGAGCAGA AGTATTTGAA 
AGCTCGTGAC ACTCGTCACC GTCATACGAA TGAGAGCACG AGAAAGCGAG 
TGATATTCTA CACAGTAGGA GAGTACATTT TCCTTGCCGC AGCTAGTGGA 
CTTCAAGTTC TCTACATCCG CAAGCTCTTC AGCAAGTCGG TAGCATACAA 
CAGAGTTTGA ACATAGCAAA ACCTCAGAGC GAGGTCTTGT GTCCAGTTTA 
TGTTTGAATC GGTGATCAAA ACACAATCCT AAACAGTGTT AGTTAATTTA 
AAAGCTTCAA TAGCGAAAGA CTTACTTTTT GTTTTTGGTT TCTACACTTT 
TATAAGTTTA CTAATGCAGA ACTTGATGAA GCTTTTTTCT G

Gene models with high sequence identity

  1. AT3G22845.1 [+] show detail - emp24/gp25L/p24 family/GOLD family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther COATED VESICLE MEMBRANE PROTEIN 3e-109
HMMPanther COPII-COATED VESICLE MEMBRANE PROTEIN 3e-109
superfamily Supernatant protein factor (SPF), C-terminal 2.5e-06
ProfileScan GOLD 16.244
HMMPfam emp24/gp25L/p24 4.1e-41

See the detailed result >

AT3G22845.1

Model type
Protein coding
Short Description
emp24/gp25L/p24 family/GOLD family protein
Computational Description
emp24/gp25L/p24 family/GOLD family protein; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT3G07680.1); Has 1821 Blast hits to 1821 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 918; Fungi - 476; Plants - 264; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-I19 introduced

  • F27738 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds