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RAFL06-15-I24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03211)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-I24 - full reading 
CTCATTTTCC ACCATTAAAA AACCTCTCTA CTCTCTCCTC AAAAACTCAA 
AAGAGCAAAA AAAAGAGAAG AAGAATCAAA ATCCCACACA ATGGCAACAC 
ACTCTTCCTT CACCGCAACA ACACCTCTCT TTCTCATCGT TCTTCTATCC 
CTATCCTCCG TCTCAGTTCT CGGCGCATCT CACCACCACG CAACGGCGCC 
GGCTCCGTCT GTAGACTGTT CGACTCTCAT ACTCAACATG GCTGACTGTT 
TATCCTTCGT TTCGAGCGGA GGCACGGTGG CGAAACCGGA AGGTACATGT 
TGCTCTGGTC TTAAGACGGT GCTTAAAGCT GACTCTCAGT GTCTATGTGA 
AGCGTTTAAG AGCAGTGCTT CTCTTGGAGT TACTTTGAAT ATCACTAAGG 
CTTCTACTCT TCCCGCCGCA TGCAAGCTTC ACGCTCCTTC TATCGCTACT 
TGTGGATTGT CTGTTGCTCC AAGTACTGCT CCAGGTCTTG CTCCAGGAGT 
AGCTGCTGCT GGACCTGAGA CAGCCGGATT TCTAGCTCCA AATCCTTCTT 
CAGGGAACGA TGGATCTTCT TTGATTCCGA CCTCGTTCAC AACTGTACTC 
AGTGCCGTAC TGTTCGTTTT GTTCTTCTCT AGTGCGTAAA AAAAAACCTG 
AATCTTTTTT CACCAGCTAG ATTTGGCTGT ATGAAATTGA TTAATGGTTT 
TTATTAGGGT TAATCTATGT ATGTTTTGGA GTGTTCTGTT TTTAGACCAT 
ATCGGTTTCT CTATTACTAG CGTTTACTCT TTTAGTTTAT GTTATTACTT 
TGTCTCAC

Gene models with high sequence identity

  1. AT5G64080.1 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.000000051
FPrintScan Plant lipid transfer protein/Par allergen 0.0000098
FPrintScan Plant lipid transfer protein/Par allergen 0.0000098
FPrintScan Plant lipid transfer protein/Par allergen 0.0000098
Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 0.0000000023
HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.000000058
superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 5.3e-21

See the detailed result >

AT5G64080.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G13820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-I24 introduced

  • F08413 - Specific phenotypes were NOT observed.
  • F11328 - Specific phenotypes were NOT observed.
  • F22917 - Specific phenotypes were NOT observed.
  • F23708 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found