1. Home
  2. Full-length cDNAs
  3. RAFL06-15-J24

RAFL06-15-J24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03214)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-J24 - full reading 
ATACCGATTT CCGAACACAA CCCTAAAGAG GCTTCTTCGA CGACGTTGGT 
TCTTTTTCCT TTGTCCTGCG CCGCGATCTC TCCTTCTCCA ACTTCCCTCG 
TCCTGTCCAA AGAAAATGCC AAAGGTTAAA ACTAACCGAG TCAAGTACCC 
AGAAGGATGG GAGTTGATCG AGCCTACTCT TCGAGAGCTT GATGCCAAGA 
TGAGAGAAGC TGAGACTGAT TCACATGATG GTAAGAGAAA GTGTGAAACT 
TTATGGCCAA TCTTCAAAGT TTCTCATCAG AGGAGTCGGT ATGTATATGA 
CCTTTATTAC CGAAGGGAAG AAATATCTAA AGAGCTCTAT GAATTCTGCT 
TGGACCAGGG CTATGCAGAT CGCAGTCTGA TTGCCAAATG GAAAAAGTCG 
GGATACGAAC GTTTATGCTG CTTGCGCTGC ATACAGCCAA GAGACCACAA 
CTATGGAACA ACATGTGTAT GCCGTGTTCC CAAACACTTG CGTGAAGAGA 
AAGTGGTCGA ATGCGTTCAC TGCGGCTGTC AAGGATGCGC GAGTGGCGAT 
TAAATTCAAC ATAGCTTTAT TCGCTATCTC TGACTGTTTG TTACAATCTT 
GTCACTTGTT AAATCTGGAT TATGTATTAT TCCATAAAGG CTAAAAACCC 
TGACTAAAAA TCT

Gene models with high sequence identity

  1. AT4G21110.1 [+] show detail - G10 family protein
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
FPrintScan G10 protein 8.1e-59
FPrintScan G10 protein 8.1e-59
FPrintScan G10 protein 8.1e-59
FPrintScan G10 protein 8.1e-59
FPrintScan G10 protein 8.1e-59
PatternScan BUD31/G10-related, conserved site 0
HMMPanther G10 protein 5.3e-90
HMMPfam G10 protein 1.2e-60

See the detailed result >

AT4G21110.1

Model type
Protein coding
Short Description
G10 family protein
Computational Description
G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-J24 introduced

  • F03934 - Specific phenotypes were NOT observed.
  • F04345 - Specific phenotypes were NOT observed.
  • F08217 - Specific phenotypes were NOT observed.
  • F22809 - Specific phenotypes were NOT observed.
  • F24705 - Specific phenotypes were NOT observed.
  • F27846 - Specific phenotypes were NOT observed.
  • F28738 - Specific phenotypes were NOT observed.
  • F29107 - Specific phenotypes were NOT observed.
  • F30126 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

18 mutant lines found