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  3. RAFL06-15-M19

RAFL06-15-M19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09419)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-M19 - full reading 
GAACATTTCA TATATAAGAA GATATACAAG CCTACCAAAC ATAACAAAAC 
ATATTTTAAA CACCAGCAAG TTTATATTGC AAAGCGTTTC ATCATGATCA 
TGAAGATATC TATGGCTATG TGCAAACAAC CATTGCCTCC TTCGCCGACT 
TTAGACTTCC CTCCAGCGAG ATTTGGTCCC AATATGCTAA CTCTAAACCC 
ATACGGTCCA AAGGACAAAG TTGTGGTCAT CATGGGTGCT ACCGGGACAG 
GCAAGTCACG ACTCTCCGTG GATATAGCCA CACGTTTTCG GGCTGAGATC 
ATAAACTCAG ACAAGATACA AGTCCACCAA GGTCTAGACA TTGTAACCAA 
CAAGATCACG AGCGAGGAGA GCTGCGGGGT ACCGCACCAT CTCCTCGGCG 
TCTTGCCGCC TGAAGCCGAC TTAACCGCCG CGAATTACTG TCACATGGCG 
AATCTCTCCA TTGAATCCGT CCTAAACCGT GGAAAGCTTC CAATCATCGT 
TGGAGGTTCC AACTCTTACG TGGAGGCTCT AGTGGATGAC AAAGAAAACA 
AGTTCAGGTC GAGATACGAC TGTTGTTTTC TATGGGTGGA CGTGGCACTT 
CCCGTTTTGC ACGGGTTCGT GTCTGAGAGA GTTGACAAGA TGGTGGAGAG 
TGGAATGGTT GAGGAAGTCA GAGAATTTTT CGACTTTTCG AACTCTGATT 
ACTCAAGAGG GATCAAGAAA GCAATCGGAT TTCCGGAGTT TGACAGGTTT 
TTCAGGAACG AGCAGTTCTT GAATGTGGAA GACAGAGAAG AACTGTTAAG 
TAAAGTGTTG GAAGAAATAA AGAGGAATAC ATTTGAGTTA GCTTGTAGGC 
AGAGAGAAAA GATCGAACGG TTGAGAAAAG TGAAGAAGTG GTCTATTCAG 
AGAGTGGATG CGACTCCAGT CTTTACAAAG CGAAGGTCCA AGATGGATGC 
TAACGTGGCC TGGGAGAGGC TCGTGGCTGG ACCAAGCACA GATACTGTGT 
CGCGGTTTCT GCTGGACATT GCCAGCCGAC GACCGCTCGT GGAAGCTTCA 
ACAGCGGTTG CGGCCGCCAT GGAACGCGAG TTGTCGCGGT GTCTAGTGGC 
GTGATCAGTT GTAACCACGT AAAAGATAAG GGTGGATTCT GAAGAAATGT 
GGTTAATTTA CGCCAATGGT ACTTATTGGT GATGGTGACG GGGCAATGAT 
CCGATCAAAA TATACGAGGC TACGATGAGT GGTGGAAAAA TATAAAAAAA 
TAAGCTACAA AAATAAAATA TGATATATAT GCATATCGTA TTATCGTATA 
TAGTATTGTC AGATACTGAA AATTTTGGCA TAACGGTTAT TCAGTATTAT 
CATCTACTTT TTTGGATGTA AGTGAGACTG TGAGTGGAAT GCTATATTTG 
C

Gene models with high sequence identity

  1. AT3G63110.1 [+] show detail - isopentenyltransferase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam tRNA isopentenyltransferase 1.7e-18
HMMPfam tRNA isopentenyltransferase 0.000000000012
HMMPanther CYTOKININ SYNTHASE 5.6e-132
HMMPanther tRNA isopentenyltransferase 5.6e-132
superfamily P-loop containing nucleoside triphosphate hyd 0.000000000000013

See the detailed result >

AT3G63110.1

Model type
Protein coding
Short Description
isopentenyltransferase 3
Curator Summary
Encodes cytokinin synthase involved in cytokinin biosynthesis. IPT3 subcellular localization is modulated by farnesylation- when farnesylated it is localized to the nucleus, otherwise to the chloroplast.
Computational Description
isopentenyltransferase 3 (IPT3); CONTAINS InterPro DOMAIN/s: tRNA isopentenyltransferase (InterPro:IPR002627); BEST Arabidopsis thaliana protein match is: isopentenyltransferase 5 (TAIR:AT5G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-M19 introduced

  • F14828 - Specific phenotypes were NOT observed.
  • F18732 - seed::decreased size / seed::decreased length / seed::increased width
  • F24223 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found