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RAFL06-15-P10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03231)

full reading [+] show sequence

Nucleotide sequence: RAFL06-15-P10 - full reading 
ATTTCTTCTT CACCTTTAGA TTTTTCCTCG CTTAATTTCT CAATAACGCT 
CTCAGAGAGA CCATTTGATG AAGCTTCTCG CTTCTGGAAT TTGAAAAGGA 
TTTGATAAGA CGAGTTCATA GAAGATTACC GCAAGTTCAT CAACTTTTTG 
AACTTGTTAT GGAGATAATC TCACTGAACG TTGTGCCCCA GTGCTCTGTG 
GTTACTTGGA GTAGTAAATT AGCAACGAAA AGATTGGTCC CAAATCGGTC 
AAGTTTGTTA TTCTCAGGGG TCAAAAAATC CAGACTTGTG ATTCGAAGTG 
GAAATTCCGA TGGTTATGTT GTTGGTGAGA ATGATGACTT GGGTCGTATA 
GCCAGAAGAG GAGAATCAAC GTCAAAGGTT TTGATTCCTG GTTTGCCTGA 
TGAATCAAAT GGTGAAATTG CTGCTCGAAT CAGTCATTCT CACTGCGAGT 
GGAAGCCCAA GCTTAGAGTA CATTATGAGA AAGCCGGTTG TGACAATCTC 
GATGCTCCTG CGGTGTTGTT TCTTCCTGGC TTTGGCGTTG GTTCATTTCA 
CTATGAGAAG CAGCTTACCG ATTTGGGAAG GGATTATCGA GTATGGGCTA 
TTGATTTTCT TGGACAGGGT TTATCTCTCC CTACTGAAGA TCCTACTACC 
ATGACTGAAG AAACCAGTTC CTCGGAAGAT AAGGAACCAT TTTGGGGATT 
TGGTGACAAA ACTGAACCGT GGGCTGATCA ACTTGTATTC TCTCTGGATC 
TCTGGAGGGA TCAAGTTCAG TATTTTGTAG AAGAGGTTAT CGGTGAGCCT 
GTGTACATTG CAGGGAACTC ACTTGGAGGG TATGTAGCTC TCTACTTTGC 
AGCAACCCAT CCTCACCTGG TTAAGGGTGT TACCTTGCTT AATGCAACAC 
CTTTCTGGGG TTTCTTCCCT AATCCAGTAA GATCCCCAAA GCTAGCACGT 
CTCTTTCCAT GGCCCGGAGC ATTCCCTCTG CCGGAAAGAG TGAAAAAAAT 
CACAGAATTG GTGTGGCAAA AGATAAGTGA TCCTGAAAGC ATAGCTGAGA 
TACTTAAACA GGTCTACACA GACCATTCTA TCAATGTGGA TAAAGTATTC 
TCACGTATTG TGGAGGTCAC ACAGCATCCG GCTGCTGCAG CATCGTTTGC 
TTCAATCATG CTTGCTCCTG GTGGAGAGCT ATCTTTCTCC GAAGCTTTAT 
CTAGGTGTAA GGAAAACAAT GTTCAGATAT GTCTCATGTA TGGAAGAGAA 
GATCCATGGG TGAGACCGTT ATGGGGAAAG AAGATAAAGA AGGAAATCCC 
CAACGCTCCA TACTACGAGA TCAGCCCAGC GGGTCACTGC CCACACGATG 
AAGTCCCTGA GGTGGTGAAC TATCTGATGC GCGGGTGGAT CAAGCACCTG 
GAGTCTGGTG GTTTTGAAGC GCTCCCGCTT TTGGAGGACA CTGAAGAAGA 
TTGGGAGGAG TCCAGGATTG GTAGAGAAAT TGAGTTCCCG AGAGATGGTT 
GGAAAAAAGC AGTGAATCTG TGGTTATATG GGTCAAACTA TACGTACTGG 
AGAGGAGTTA GAGAATCTTT CAGATCCAGT TTTATAAGGG TGTTTGGAGG 
GAAGTCTGCA TAGAAGAAGC ATGGAACAGT CGTCTAGTGT AAATTAATTG 
TAATCTATGT TGCATCCGAT GCTAGCTATA TAATGTTGTC TGTAGAATCA 
AGTTTCTAAA ATGTTCAAAA GGAAAAGTTA GAAAAATATC TACTTGATAG 
TTAGTCACCT AAATCGAAGG AACTCCTTTC TTGCATTGTT GTATATAATC 
CACAGGTTCA GATTAATATA GGAAGGCGAC ATTGCAGGCT

Gene models with high sequence identity

  1. AT5G13800.1 [+] show detail - pheophytinase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily alpha/beta-Hydrolases 1.4e-49
Gene3D no description 1.3e-43
HMMPanther ALPHA/BETA HYDROLASE 2.9e-77
HMMPanther ALPHA/BETA HYDROLASE RELATED 2.9e-77
HMMPfam Alpha/beta hydrolase fold-1 1.8e-09

See the detailed result >

AT5G13800.1

Model type
Protein coding
Short Description
pheophytinase
Curator Summary
Encodes a pheophytinase that is involved in chlorophyll breakdown.
Computational Description
pheophytinase (PPH); FUNCTIONS IN: hydrolase activity, pheophytinase activity; INVOLVED IN: chlorophyll catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G36530.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-15-P10 introduced

  • F08519 - Specific phenotypes were NOT observed.
  • F09328 - Specific phenotypes were NOT observed.
  • F10137 - Specific phenotypes were NOT observed.
  • F16026 - seed::increased size / seed::increased length
  • F21245 - Specific phenotypes were NOT observed.
  • F25048 - Specific phenotypes were NOT observed.
  • F26724 - Specific phenotypes were NOT observed.
  • F27236 - Specific phenotypes were NOT observed.
  • F28304 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found