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RAFL06-16-A22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87601)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-16-A22 - 5 prime EST 
GAACACTTCA CTAATCAATT ATTCAAAGCA GATAAAAAAA AAATGGCTCA 
AGCAGTGACT TCGATGGCTG GCTTACNGTG GAGCATCTCA GGCTGTCCTT 
GAAGGAAGTT TACAGATCAA CGGCTCAAAC CGTTTGAACA TCTCAAGAGT 
CTCGGTTGGG TCTCAGAGAA CCGGACTTGT GATCAGGGCT CAGCAGAACG 
TGTCAGTACC AGAAAGTAGT CGCCGGTCAG TGATTGGACT CGTGGCGGCT 
GGTTTAGCCG GTGGTTCATT CGTTAAAGCT GTTTTCGCCG AAGCTATTCC 
GATCAAAGTT GGTGGTCCTC CACTTCCTTC CGGTGGCCTA CCTGGAACAG 
ATAACTCAGA CCAAGCAAGA GACTTTTCAT TGGCATTGAA AGATAGATTT 
TACATACAAC CATTGTCACC AACAGAAGCT GCAGCTAGAG CCAAAGATTC 
TGCTAAAGAG ATCATCAACG TTAAGTCATT TATCGACAAA AAAGCTTGGC 
CCTATGTTCA GAACGATCTC CGTTTAAGAG CATCGTACCT CCGTTACGAT 
CTCAACACCG TTATCTCCGC TAAGCCTAAG GAAGAGAAGC AAAGCCTTAA 
AGATCTCACC GCAAAGCTTT TCCAAACCAT TGACAACTTG GACTATGCGG 
NGAGATCAAA GAGTAGCCCA

Gene models with high sequence identity

  1. AT4G05180.1 [+] show detail - photosystem II subunit Q-2
    E-value: 0; Score: 99.70

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-16-A22 - 3 prime EST 
GGTTAAAACT TGAAACTGAA ATTAGAGATA ACCGATTTGA TCAGACAAGA 
AGAGAAGGAG AAAGACAAAG TACTTGGATA GCAGTAATTA TAATAACATC 
GACATCAACA GATTACAACG CAAGTCTTTC TTCATTAACC GAGCTTGGCA 
AGAACATTGT TCAAACTCGA GACAGTTTCT GAGTAATACT TCTCAGCATC 
TGGGCTACTC TTTGATCTCG CCGCATAGTC CAAGTTGTCA ATGGTTTGGA 
AAAGCTTTGC GGTGAGATCT TTAAGGCTTT GCTTCTCTTC CTTAGGCTTA 
GCGGAGATAA CGGTGTTGAG ATCGTAACGG AGGTACGATG CTCTTAAACG 
GAGATCGTTC TGAACATAGG GCCAAGCTTT TTTGTCGATA AATGACTTAA 
CGTTGATGAT CTCTTTAGCA GAATCTTTGG CTCTAGCTGC AGCTTCTGTT 
GGTGACAATG GTTGTATGTA AAATCTATCT TTCAATGCCA ATGAAAAGTC 
TCTTGCTTGG TCTGAGTTAT CTGTTCCAGG TAGGCCACCG GAAGGAAGTG 
GAGGACCACC AACTTTGATC GGAATAGCTT CGGCGAAAAC AGCTTTAACG 
AATGAACCAC CGGCTAAACC AGCCGCCACG AGTCCAATCA CTGACCGGCG 
ACTACTTTCT GGTACTGACA CGTTCTGCTG AGCCCTGATC ACAAGTCC

Gene models with high sequence identity

  1. AT4G05180.1 [+] show detail - photosystem II subunit Q-2
    E-value: 0; Score: 100.00

AT4G05180.1

Model type
Protein coding
Short Description
photosystem II subunit Q-2
Curator Summary
Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II.
Computational Description
photosystem II subunit Q-2 (PSBQ-2); FUNCTIONS IN: calcium ion binding; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbQ (InterPro:IPR008797); BEST Arabidopsis thaliana protein match is: photosystem II subunit QA (TAIR:AT4G21280.1); Has 206 Blast hits to 206 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-A22 introduced

  • F03535 - Specific phenotypes were NOT observed.
  • F14922 - Specific phenotypes were NOT observed.
  • F16540 - Specific phenotypes were NOT observed.
  • F17930 - Specific phenotypes were NOT observed.
  • F19733 - cauline leaf::increased size
  • F22624 - Specific phenotypes were NOT observed.
  • F27924 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found