1. Home
  2. Full-length cDNAs
  3. RAFL06-16-E14

RAFL06-16-E14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07580)

full reading [+] show sequence

Nucleotide sequence: RAFL06-16-E14 - full reading 
AGACAGGAGA TATGAACTGC GGAGGAAAGG TGGTCTGCGT TACCGGAGCT 
TCCGGCTACA TAGCGTCTTG GATTGTCAAG CTTTTGCTCC TCCGTGGCTA 
CACCGTCAAT GCCACTGTTC GAGATCCAAA GGACAAGAAG AAAACAGAAC 
ATCTTCTTGC ACTAGACGGT GCAAAAGAAA GACTCAAATT GTTCAAAGCA 
GATCTTTTGG AAGAATCTTC TTTTGATCAA GCTATCGATG GTTGTGATGC 
TGTCTTCCAC ACTGCTTCTC CAGTTCTATT CACTGTCACA GATCCTCAGA 
CTGAGCTGAT TGATCCAGCC TTAAAGGGTA CTATTAACGT CCTTAATACA 
TGCAAACAAG TTTCTTCTGT CAAGAGGGTC ATTCTGACAT CTTCCACGGC 
TGCGGTTCTC TCTCGTCAGC CTCCTATTGG GCCAAACGAC CTGGTGGACG 
AGACTTTCTT CTCCGATCCA AGTCTATGCA GGGAGACAAA GAATTGGTAT 
TCACTCTCCA AGATTTTGGC CGAGAATGCA GCGTGGCAAT TTGCCAAAGA 
CAATGGAATC GACATGGTTG TGTTGAATCC TGGATTTATT TGCGGACCAC 
TCTTGCAACC AACTCTTAAC ATGTCGGTAG AGCTAATTGT GGATTTCATA 
AATGGTAAGA ACCCTTTCAA TAAAAGATAC TACAGGTTCT CGGACGTAAG 
AGATGTCGCC TTGGTTCATA TCAAAGCGTT GGAGACTCCT TCAGCCAATG 
GCAGATACAT CATCGATGGT CCAAATATGA GTGTAAACGA CATTATAGAC 
ATTCTTCGGA AGCTGTTCCC AGATTTGTCT ATTGCTGATA CGAATGAAGA 
AAGTGAGATG AATGAGATGA TATGCCAAGT GTGTGTGGAG AAAGTGAAAA 
ATTTGGGAGT AGAGTTCACT CCTATGAAAT CAAGCCTTAG AGACACTATT 
GTTAGCCTCA AGGAGAAATG TCTTTTATGA TTCTGTTCGT ATATTTGTAA 
CTATTATGTG TATTTTTATT TTGTTAGTAT TACTAATTCA AGTGGTTTAA 
GCT

Gene models with high sequence identity

  1. AT1G09490.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily NAD(P)-binding domain 3.5e-58
Gene3D NAD(P)-binding domain 2.7e-36
HMMPanther CINNAMOYL-COA REDUCTASE 8.8e-166
HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 8.8e-166
HMMPfam NAD-dependent epimerase/dehydratase 2e-25

See the detailed result >

AT1G09490.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase; Location of EST gb:H37170, gb:H77227 and gb:AA605565
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09480.1); Has 10413 Blast hits to 10399 proteins in 1719 species: Archae - 172; Bacteria - 4069; Metazoa - 410; Fungi - 939; Plants - 2479; Viruses - 15; Other Eukaryotes - 2329 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-E14 introduced

  • F26430 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found