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RAFL06-16-I03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03252)

full reading [+] show sequence

Nucleotide sequence: RAFL06-16-I03 - full reading 
GAGATCCCAT TTCTTTTGTT GGCTTACTTC TCTCGAATTT ACGCAGGAAG 
ATCATTAGCA GAGAATTCTC ATCTGATTCA GTCCATGGCT GCCACGGCTC 
TTTTCCGATC GATTCGTCGA CGCGACGTCG TCTCCGCGCC TCTTTCCGTT 
TACAAATCCC TTGCTGGTAA TGCTCAACCT TCCTGGGGTA GTTCATACAT 
TGGTCAGAAC TATGCAAGTT TCTCCAGAGC TTTCGGGTCA AAACCTGTTG 
TGAATGACAT TCTTGGTACT GGTTTGGGCA CTAACAATGC CATTAGAGAG 
GAGAGAGAGA AGTCAAAATC TACTGAAGCT GCAATTGTTG GTGCTCAATT 
GACTCGATCT TTCCGTGCTC TTGATGTGGG AACATCGAAA CGATTGTTTT 
CTACAATCTC AGGGGATATA AAGACAACAC AGGAGGAACC AAAAATCAAA 
AGCTTTCGCC CTTTATCTCC TCACCTTTCT GTTTACCAGC CTCAGATGAA 
CTCCATGCTA TCGATTTTCA ACAGAATCTC AGGGGTTTAC TTGACCGGTG 
TCACTTTCGC TGGCTACCTT CTCTACCTGA AGATGGGTAT GATCTGCCTC 
ACCTACCCGA GTTTCTACCA AGTCCTTTAC CATACACAAC AGCAACTTCC 
AGTCATCACC TCGGTTACTG CATTAGCCGC TATTTATCAT ACTATCAAGA 
GTACTCACTC ACTCTTGACC CATTAAAAAC CTTTACCAAA GCTCTTTCGA 
TGAAGCCGCC AAAGTCTCCA GTAAGAGTTT CTTTGAGATG ATTAATAAGG 
AGACAAGAAA ACATTTGTTA AACTCTGTCT TGAAAAGGTA AAGATTTAGC 
ACCTGTTTCT TTGGATTCGA GGCTTTTTTG GGGGTATGTT TGTTGCTTTT 
CTTTGTTCTC AGACCTTTTT TTGAATGATG TAATAAATGT TTACCAAAGT 
TCTGTTGCTA CGTTACTCTT TTTGTT

Gene models with high sequence identity

  1. AT4G32210.1 [+] show detail - succinate dehydrogenase 3-2
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
superfamily Fumarate reductase respiratory complex transm 1.1e-11
HMMPanther SUCCINATE DEHYDROGENASE CYTOCHROME B560 5.5e-10
HMMPfam Succinate dehydrogenase/Fumarate reductase, transmembrane subunit 3.7e-11
Gene3D no description 9.3e-10

See the detailed result >

AT4G32210.1

Model type
Protein coding
Short Description
succinate dehydrogenase 3-2
Curator Summary
Encodes one of the membrane anchor subunits of the mitochondrial respiratory complex II. The protein is encoded by the nuclear genome but is imported into the mitochondrion. There are two genes that encode this protein, the other is SDH3-1.
Computational Description
succinate dehydrogenase 3-2 (SDH3-2); CONTAINS InterPro DOMAIN/s: Succinate dehydrogenase/Fumarate reductase, transmembrane subunit (InterPro:IPR000701); BEST Arabidopsis thaliana protein match is: succinate dehydrogenase 3-1 (TAIR:AT5G09600.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-I03 introduced

  • F07214 - Specific phenotypes were NOT observed.
  • F10545 - Specific phenotypes were NOT observed.
  • F15030 - Specific phenotypes were NOT observed.
  • F20827 - Specific phenotypes were NOT observed.
  • F21214 - Specific phenotypes were NOT observed.
  • F30409 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

15 mutant lines found