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  3. RAFL06-16-L14

RAFL06-16-L14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07588)

full reading [+] show sequence

Nucleotide sequence: RAFL06-16-L14 - full reading 
AAGCTCTCAC CACAGTTTGA GAAGCGAAAA TGGTGTCAGG ATCAGGGATA 
TGCTCGAAGC GCGTTGTCGT CGACGCGCGC CACCACATGC TTGGCCGTCT 
TGCGTCGATC ACCGCTAAAG AGCTTCTCAA TGGCCAGAAA GTTGTCATTG 
TCCGGTGCGA AGAGATTTGC CTCTCCGGCG GACTCGTTCG TCAGAAAATG 
AAGTACATGA GGTTTCTTCG CAAACGTATG AACACTAAAC CTTCTCATGG 
ACCTATTCAC TTCCGTGCTC CTTCCAAAAT CTTCTGGCGT ACTGTTCGCG 
GTATGATTCC ACACAAGACG AAGCGTGGAG CTGCTGCATT AGCACGTCTG 
AAGGTATATG AAGGTGTTCC TACTCCATAT GACAAGATCA AGAGGATGGT 
CATCCCTGAT GCTCTCAAGG TGTTGAGGCT TCAAGCTGGT CACAAATACT 
GTCTATTGGG CCGTCTTTCT TCTGAAGTTG GGTGGAACCA TTACGACACC 
ATCAAGGAGC TGGAGACAAA GAGGAAGGAG AGAGCCCACG TGGTTTACGA 
GCGAAAGAAG CAACTTAACA AACTTAGAGT TAAGGCCGAG AAGGTCGCTG 
AAGAGAAGCT CGGAGCACAG CTCGATATTC TTGCGCCAGT TAAGTACTGA 
GCTTGTCAGT AGTAGTTTTT TTTTTTT

Gene models with high sequence identity

  1. AT5G48760.1 [+] show detail - Ribosomal protein L13 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Ribosomal protein L13, eukaryotic/archaeal 1e-135
HMMPanther Ribosomal protein L13 1e-135
HMMPfam Ribosomal protein L13 8.7e-28
HMMTigr Ribosomal protein L13, eukaryotic/archaeal 3.8e-73
Gene3D Ribosomal protein L13 5.7e-46
PatternScan Ribosomal protein L13 0
superfamily Ribosomal protein L13 1e-49

See the detailed result >

AT5G48760.1

Model type
Protein coding
Short Description
Ribosomal protein L13 family protein
Computational Description
Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT4G13170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-L14 introduced

  • F26228 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds