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RAFL06-16-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87619)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-16-M11 - 5 prime EST 
GGTCTCGTTG TCCTCCTCAC TTTCATCAGC CGTTTTGAAT CTCCGGCGAC 
TTGACAGAGA AGAACAAGGA AGAAGACTAA GAGAGAAAGT AAGAGATAAT 
CCAGGAGATT CATTCTCCGT TTTGAATCTT CCTCAATCTC ATCTTCTTCC 
GCTCTTTCTT TCCAAGCTCA TAAAAAATGG CTGAGGCTGA TGATATTCAA 
CCAATCGTGT GTGACAATGG TACCGGTATG GTGAAGGCTG GATTTGCAGG 
AGATGATGCT CCCAGGGCTG TTTTTCCCAG TGTTGTTGGT AGGCCAAGAC 
ATCATGGTGT CATGGTTGGG ATGAACCAGA AGGATGCATA TGTTGGTGAT 
GAAGCACAAT CCAAGAGAGG TATTCTTACC TTGAAGTATC CTATTGAGCA 
TGGTGTTGTT AGCAACTGGG ATGATATGGA AAAGATCTGG CATCACACTT 
TCTACAATGA GCTTCGTATT GCTCCTGAAG AGCACCCTGT TCTTCTTACC 
GAGGCTCCTC TTAACCCAAA GGCCAACAGA GAGAAGATGA CTCAAATCAT 
GTTTGAGACC TTTTAACTCT CCCGCTATGT ATGTCNCCAT CCAAGCTGTT 
CTCTTCTTGT ACGCCAGCGG CCGTACAACC GGTATTGTGC TGGATTCTGG 
TGANGGTGCG TCTCNCC

Gene models with high sequence identity

  1. AT3G18780.2 [+] show detail - actin 2
    E-value: 0; Score: 98.94

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-16-M11 - 3 prime EST 
CGGAATAAAG AGGCATCAAT TCGATCACTC AGAGCTACAA AACAATGGGA 
CTAAAACGCA AAACGAAAGC GGTTTTTTTT TTTGAAACGC AGACGTAAGT 
AAAAACCCAG AGAGTTTGTC ACACACAAGT GCATCATAGA AACGAAAACA 
AAAAGGGAAA TGAAACAAAC AAATGGAGAA GCAAATATAA AAGAAAAAAA 
AGAAACTTTG ATCCCATTCA TAAAACCCCA GCTTTTTAAG CCTTTGATCT 
TGAGAGCTTA

Gene models with high sequence identity

  1. AT3G18780.2 [+] show detail - actin 2
    E-value: 2e-140; Score: 99.61

AT3G18780.2

Model type
Protein coding
Short Description
actin 2
Curator Summary
Encodes an actin that is constitutively expressed in vegetative structures but not pollen. ACT2 is involved in tip growth of root hairs.
Computational Description
actin 2 (ACT2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, membrane, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 8 (TAIR:AT1G49240.1); Has 15142 Blast hits to 14749 proteins in 3039 species: Archae - 6; Bacteria - 12; Metazoa - 5705; Fungi - 5217; Plants - 1599; Viruses - 2; Other Eukaryotes - 2601 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-M11 introduced

  • F08933 - Specific phenotypes were NOT observed.
  • F19307 - rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::abnormal / whole plant::decreased height / stem::present in fewer numbers in organism
  • F21847 - Specific phenotypes were NOT observed.
  • F22806 - fruit::abnormal / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found