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RAFL06-16-N18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07595)

full reading [+] show sequence

Nucleotide sequence: RAFL06-16-N18 - full reading 
ATCTTCTAAG AAAGAAACAA AGAAAGACTT CACATTTTAC CATTATTTGC 
TCTGAGCTCA GTAGGAGAGT TCAAGAAACA ATGGCAAAGA TGCAATTATC 
AATCTTTATC GCTGTCGTTG CGCTTATCGT CTGCTCTGCA TCTGCTAAAA 
CCGCAAGCCC TCCAGCTCCA GTGCTGCCAC CGACACCAGC TCCAGCACCA 
GCCCCGGAAA ATGTGAATCT CACCGAGCTT TTAAGTGTAG CTGGTCCGTT 
CCACACATTC CTCGACTACC TTCTCTCGAC TGGAGTCATT GAGACTTTCC 
AAAACCAAGC TAACAACACT GAGGAAGGCA TCACAATCTT TGTCCCTAAA 
GATGATGCTT TCAAAGCTCA GAAGAATCCT CCTTTGTCAA ATCTCACAAA 
GGATCAGCTT AAGCAGCTTG TTCTCTTCCA TGCTCTGCCT CATTACTATT 
CGCTTTCGGA ATTCAAGAAC TTGAGCCAAT CTGGTCCAGT GAGCACCTTT 
GCTGGTGGTC AATACTCCTT GAAATTCACT GATGTTTCTG GCACGGTTAG 
GATTGATTCT TTATGGACCA GGACTAAAGT CAGCAGCAGT GTTTTCTCCA 
CTGACCCTGT TGCGGTTTAC CAAGTGAACC GCGTGCTTCT ACCCGAAGCA 
ATCTTTGGTA CTGATGTCCC TCCAATGCCT GCTCCAGCTC CTGCTCCTAT 
CGTTAGTGCT CCTTCGGATT CTCCTTCAGT TGCTGATTCT GAAGGAGCTT 
CTTCACCAAA GTCCTCACAC AAGAACTCCG GACAAAAGCT GCTACTTGCA 
CCAATCTCCA TGGTTATTTC CGGTTTGGTG GCATTGTTCT TGTGATCAGA 
TGGTTTTGCA GATTGAGTTA TGTTTTTAAG TTACAATGTG AAAGATTGTA 
TTACATCATT TGAATTGTCT TTTTGATTTT TGAAACCCAT TTTTTATTAT 
ACATTTTTAT CATCG

Gene models with high sequence identity

  1. AT2G04780.1 [+] show detail - FASCICLIN-like arabinoogalactan 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart FAS1 domain 3e-24
superfamily FAS1 domain 1.8e-26
ProfileScan FAS1 domain 19.747
HMMPfam FAS1 domain 8.3e-22

See the detailed result >

AT2G04780.1

Model type
Protein coding
Short Description
FASCICLIN-like arabinoogalactan 7
Curator Summary
fasciclin-like arabinogalactan-protein 7 (Fla7)
Computational Description
FASCICLIN-like arabinoogalactan 7 (FLA7); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan 6 (TAIR:AT2G20520.1); Has 713 Blast hits to 707 proteins in 79 species: Archae - 4; Bacteria - 65; Metazoa - 1; Fungi - 0; Plants - 633; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-N18 introduced

  • F06144 - Specific phenotypes were NOT observed.
  • F10235 - Specific phenotypes were NOT observed.
  • F13650 - rosette leaf::epinastic / rosette leaf::variegated / rosette leaf::abnormal / cauline leaf::epinastic / whole plant flowering stage::late / root::present in greater numbers in organism
  • F16848 - Specific phenotypes were NOT observed.
  • F20211 - Specific phenotypes were NOT observed.
  • F20449 - Specific phenotypes were NOT observed.
  • F24318 - Specific phenotypes were NOT observed.
  • F26146 - Specific phenotypes were NOT observed.
  • F26336 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found