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RAFL06-16-O07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87622)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL06-16-O07 - 5 prime EST 
GATTTCCTCA CTCAACTCTC TCATTCTCAC TAACAGAGAG AAAAAGCAAA 
AGCAAAAATG GCTCGATCTT TCGCTATTGC TGNGATCTGT ATCGTCCTCA 
TCGCCGGCGT TACTGGTCAA GCTCCGACTT CACCACCAAC CGCTACACCA 
GCTCCACCAA CTCCAACAAC TCCTCCACCA GCAGCAACTC CTCCTCCTGT 
CTCAGCACCA CCACCAGTCA CAACATCTCC TCCTCCAGTC ACCACTGCTC 
CTCCTCCAGC AAATCCACCA CCACCAGTCT CTTCTCCTCC TCCTGCTTCT 
CCTCCACCAG CTACTCCTCC TCCAGTCGCT TCTCCTCCTC CTCCCGTTGC 
TTCTCCTCCA CCAGCAACTC CTCCTCCCGT CGCTACTCCT CCCCCAGCTC 
CTCTAGCTTC CCCTCCTGCT CAAGTTCCAG CTCCAGCACC GACCACGAAG 
CCAGATTCTC CATCTCCATC TTCGTCATCT AGCCCACCTC TTCCATCAAG 
CGACGCTCCT GGACCTAGCA CCGATTCTAT CTCTCCTGGT CCTAGCCCCA 
CTGATGTGAA CGACCAGAAT GGAGCTAGCA AGANGGNTTC GAGCTTA

Gene models with high sequence identity

  1. AT2G14890.1 [+] show detail - arabinogalactan protein 9
    E-value: 0; Score: 99.16

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-16-O07 - 3 prime EST 
CGAGAAAAGG AATGTAGTAC ACTAATAATC AAATGGAATG AGAAATGAAG 
CCACAAAAGT ATCTGCAATC AAAATATCCT GCTATCTCCA TCTCAAGCTC 
TCAATAGTAT CCTCTCCGAA AGATAATAAA TCCCAAAAGA ATTCAGTCCC 
AAGCAATACA GTGGAACAAA CAAAGACGAC ATAAAAATAA ATGCAAGTAA 
CACAGTCACA AAAGATTCCA CTTAGATCAT AAACCAGACG AGAACAGATC 
CAAATACTAA GCTCGAAACC ATCTTGCTAG CTCCATTCTG GTCGTTCACA 
TCAGTGGGGC TAGGAGCAGG AGAGATAGAA TCGGTGCTAG GTCCAGGAGC 
GTCGCTTGAT GGAAGAGGTG GGCTAGATGA CGGAGATGGA GATGGAGAAT 
CTGGCTTCGT GGTCGGTGCT GGAGCTGGAA CTTGAGCAGG AGGGGAAGCT 
AGAGGAGCTG GGGGAGGAGT AGCGACGGGA GGAGGAGTTG CTGGTGGAGG 
AGAA

Gene models with high sequence identity

  1. AT2G14890.1 [+] show detail - arabinogalactan protein 9
    E-value: 0; Score: 100.00

AT2G14890.1

Model type
Protein coding
Short Description
arabinogalactan protein 9
Curator Summary
putative proline-rich protein (At2g14890) mRNA, complete
Computational Description
arabinogalactan protein 9 (AGP9); Has 285298 Blast hits to 106417 proteins in 3252 species: Archae - 851; Bacteria - 74147; Metazoa - 98199; Fungi - 38441; Plants - 27968; Viruses - 7387; Other Eukaryotes - 38305 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-O07 introduced

  • F01514 - Specific phenotypes were NOT observed.
  • F15607 - Specific phenotypes were NOT observed.
  • F15940 - seed::increased size
  • F17448 - Specific phenotypes were NOT observed.
  • F20040 - Specific phenotypes were NOT observed.
  • F25151 - Specific phenotypes were NOT observed.
  • F26607 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found