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  3. RAFL06-16-O18

RAFL06-16-O18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87624)

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-16-O18 - 3 prime EST 
GAAAATCAAA GGTCTATCAG TTGATTGGAA TAGAGAATAT AATGATGTCT 
TACAAGACAA ACAGAGGTAG AGACAGAGTT TAACCACGTC GTACACAAGC 
AATTCACTTA GGCCACAATT CAATCTTTCA AGAAGAAGGA GCCTTGGTCT 
TAGTGTAGTA CCGAATGCCG AAAGCCAAGC CTAAGATTAG AAGTGGAACA 
AGGAACTGAA GGAGCTTAAT AACAAAATCC GAGCTCTTAT CCTGAGTAGC 
CACGGCTTTC GTCGACGTAG GAGGCACAAA CTTAGCTTTA ACCGGCACAG 
TAGCTGTGTC AATATCACCC ACATAGTACT CATCTAGCAT GGCTTTCGCA 
GTCGAACTAT GTCCCACATC CTCGAAATCA TCGGTCGCAT CTTTCCCTGT 
AGAAGTCAAG ATAACCTCAT CACCACCAGG ATGATCATCC AA

Gene models with high sequence identity

  1. AT5G48810.1 [+] show detail - cytochrome B5 isoform D
    E-value: 0; Score: 100.00

AT5G48810.1

Model type
Protein coding
Short Description
cytochrome B5 isoform D
Curator Summary
Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.
Computational Description
cytochrome B5 isoform D (CB5-D); FUNCTIONS IN: heme binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-O18 introduced

  • F07039 - Specific phenotypes were NOT observed.
  • F10715 - Specific phenotypes were NOT observed.
  • F10919 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::increased width / cauline leaf::abnormal / whole plant::decreased height / seed::present in fewer numbers in organism

Mutant lines with disrupted or induced

8 mutant lines found