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RAFL06-16-P19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07600)

full reading [+] show sequence

Nucleotide sequence: RAFL06-16-P19 - full reading 
CTGACTTCGC CGAATGTGTG TCGATCTCCG GCGAAGTAAT AAGTCGTAAT 
AACCCTAAAA ATCTTGCCCT CTTTTTCGCC GCCGGCTAAA GCTATGAAGG 
TTTTTAATCT TGACCGTGGA AACACTCTCT CTGTTTCCCT CTTCTCCGGT 
GTCACCAACT CCAAGGAGCT CTTGAATTCA ATGCTTGACG GAAGTCTGAA 
GCTGGAGGTC TCATTTCTCA ATGCATCACT TATTCCAGAC ATTTTTCCTC 
TATTGGCTGC TGCTCAGAAA GCACTTATCT CCAAATCACG CGATTCCTTA 
TCAACCAGAA CTCTTCATTC TGAGCTTGTC TACAATTACT CAGGATCTAA 
GCACAATCAT TGAAACGATG TGGGATTTCT GAGAACACTA CTTACATTCT 
AGCTGCCCGG TTCAATGCTT CTCCCGTTGA GATGGAGGAG GTGGCGAAAT 
TGATCAACGG GAAGGAGATT GATTTGGAGG AATTGAAGAC ACATGCAAAT 
CAAGCCAATA TACTAAAGCA TTACAAGATA ACTAGCCAAG AGCTCGGAAT 
TTCCTCTCTG GGAGATGCCA TTGTTTGTCG AATAGCTGCA CGCGATGCTT 
TGTAGGAGTA GACATCTTTT CTTTATGTCT TTTGTCACCA ATTATAGTTT 
TCTCCTTTAT AAACAACGTT GACACTTACG TTTATAATTC AGACCAATGT 
TGGGTTTCC

Gene models with high sequence identity

  1. AT4G34412.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Kinase binding protein CGI-121 (InterPro:IPR013926); Has 275 Blast hi...
    E-value: 0; Score: 99.02

 

InterPro Scan Digest

Program Description E-value
HMMPanther gb def: At4g34412 7.5e-65
HMMPanther CGI-121 FAMILY MEMBER 7.5e-65
HMMPanther gb def: At4g34412 2.2e-67
HMMPanther CGI-121 FAMILY MEMBER 2.2e-67
HMMPfam Kinase binding protein CGI-121 0.0000000000000028
HMMPfam Kinase binding protein CGI-121 0.00000000000007

See the detailed result >

AT4G34412.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Kinase binding protein CGI-121 (InterPro:IPR013926); Has 275 Blast hits to 275 proteins in 139 species: Archae - 0; Bacteria - 5; Metazoa - 98; Fungi - 109; Plants - 42; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-16-P19 introduced

  • F12645 - rosette leaf::decreased size / stem::increased thickness / stem::abnormal / cauline leaf::epinastic

Mutant lines with disrupted or induced

3 mutant lines found