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  3. RAFL06-67-D17

RAFL06-67-D17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03268)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-D17 - full reading 
AATGAGAAAA ACCTTATCCA AACTTTTAAA ATGCCCGTGG CGATCTCTCT 
CCCAACCTCA TCTACTTCTC ATTTCTTCCC TCGCCGCCGC GGCCATGCAA 
ATCACCGATA TCAACGCTTT TCCGGAGCTC AATCTTCCAC GGAAGATCCG 
TACATTCGGA AGAATCAAAC TGGCGTCATC ATCATCGGCG CTGGACTCGC 
TGGTTTAGCC GCCGCAAACC AGCTCACCTC CAAACGAATC CCTTTCCTAC 
TCCTCGAAGC TTCCGATGGC GTCGGCGGAC GCGTCCGTAC AGATATCGTC 
GACGGCTTCT TTCTCGACAG AGGATTTCAG ATTTTCATCA CCGCGTACCC 
CGAAGCTAAA AAGCTTCTAG ATTATGAAGC ACTGGATCTG CAGAGATTCT 
ACGCCGGAGC TAAGGTGTTT TACGGCGGTA AATTTCACAC CGTCGCTGAT 
CCTCTCCGAC ATTTTTGGGA TTCGGTGGCA TCTCTCGCGA ATCCGATCGG 
ATCCGTCGTT GACAAAGGGC TTATCGCTTT GACGAGAGCT AGGGTTCTAA 
TCAAGTCAGA CGAAGAGATA TTGACTGCCG CCGATGAAGT TCCCACCATT 
GATCTCCTCC GTAAGATCGG TTTCTCCGAA ACGATTCTTG ATCGGTTCTT 
CCGACCATTC TTCGGCGGAA TTTTCTTCGA CAGAGACCTC GAGACGACCT 
CGAAGCTCTT CGATTTCGTT TTCCGGTGTC TTGCTCTCGG AGAAAACACA 
CTTCCAGCCA TGGGAATCGG AGAAATCTCG AACCAGTTGG CAGCGAAGTT 
ACCCGCTAAG TCCGTCTTGT TGAACACAAG GGTCGCTTCT ATTGAGTATC 
CAAATGGATC GGGTTCGGAT CCACCTAGCG TGAGGCTCCA AGACGGCAGC 
GTTATGAAGG CAGAGCTAGG TGTCATAATC GCCGTCGAGC AACCGGAAGT 
GAATAAGCTT CTCGATGGGA TCAGAGACCC GGTTATAACA AAACCAGCTC 
GGAGCACTAT TTGTCTTTAC TTCACAGCTG AACCGAACCA AATACCGGTA 
CAAGACCCGG TTCTATTTCT CAACGGGTCA AATTCCGGTA TAATCAACAA 
CATGTTCTTC GCTACAAACG TTGCTCGGAC ATACGCGCCA CCGGGAAAGG 
CTCTGGTTTC GGTATCATTG ATCGGATTGT TTGAGGATAG AACCGATGAT 
GATTTAGCAG CAGAAGTTCT TAGAGAACTC TCTGGTTGGT TTGGTGAGTC 
TCCGGTTATG TCATGGAAAC ATTTGAAAAC ATACCGGATC CAATTCGCTC 
AGCCTAACCA ATGTCCACCC ACTGATTTGG TCAAGAGTCC TCGGGTCGGG 
TCGGGTCTTT ACTTGAGCGG TGATTACATG ACTTCTGCTA CATTTGATGG 
AGCTTTGGTC TCTGGGAGAC GAGCCGTGGA AGTTTTGCTA CGAGAAACGG 
GACTAATCAA ATAGATTTTT TTTGTTATTT AAGATTCTTT GTATGGCTTA 
ATTCATGTCT TGTATGTAGA AGTATGTATC CTCTAAGATC ATATGTTGAC 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G09580.1 [+] show detail - FAD/NAD(P)-binding oxidoreductase family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPfam Amine oxidase 7.5e-46
Gene3D no description 1.1e-22
superfamily FAD/NAD(P)-binding domain 5e-31
HMMPanther AMINE OXIDASE 1.3e-12

See the detailed result >

AT3G09580.1

Model type
Protein coding
Short Description
FAD/NAD(P)-binding oxidoreductase family protein
Computational Description
FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2908 Blast hits to 2906 proteins in 704 species: Archae - 36; Bacteria - 1433; Metazoa - 261; Fungi - 51; Plants - 352; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-D17 introduced

  • F01922 - seed::decreased width
  • F12743 - Specific phenotypes were NOT observed.
  • F15535 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

18 mutant lines found