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RAFL06-67-G19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03269)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-G19 - full reading 
CATTGAGCCG TTATATAAAT CCTTCACTCG CTCCTTGAGA AGACGAATTT 
GAGATTGCCT CTGCAAAGAG TAAAATGGCG AATCCTAAAG TCTTCTTCGA 
CATCTTGATT GGTAAGATGA AGGCAGGGCG TGTTGTAATG GAGTTATTTG 
CAGATGTGAC TCCGAGAACA GCTAATAATT TCCGTGCTTT GTGCACTGGG 
GAGAATGGTA TTGGGAAAGC AGGGAAGGCT TTACACTACA AAGGCTCAGC 
CTTTCACCGT ATAATCCCAG GGTTCATGTG TCAAGGTGGA GATTTCACTC 
GTGGGAATGG AACTGGAGGA GAATCTATTT ACGGGTCTAA ATTTGAAGAT 
GAGAACTTCA AGTTGAAGCA CACTGGTCCA GGGATTTTGT CTATGGCTAA 
CTCTGGTCCC AACACTAATG GTTCTCAGTT CTTCATCTGC ACAGAGAAGA 
CTTCGTGGCT TGATGGGAAA CATGTTGTTT TCGGGAAAGT TGTTGATGGA 
TACAATGTGG TCAAGGCAAT GGAGGATGTT GGCTCTGACA TGGGAAATCC 
TTCTGAACGA GTTGTGATTG AAGATTGTGG TGAGCTCAAG AACCCAAGTT 
CATAAGTTCT TAAAACATTG GGTGGGTTGA TCTTGACAGG TTATTCTATC 
ATATGCTGTG AAGCAGAGAC AGCATCTTAG CGTTAAGGTC AATCTAGTCT 
GTGATGCACT ACTTTGGTTT TGACTATATC ATATGAACCT TAGGAAGTGG 
TCCATCCTTG TAAGTTGTTT TCTTAAAACT CTTGTGTGAG AATAGGATGG 
ATGATAATAA TGGTTAGTTT CTTTATGAAG ACATTTGGTT TTGGAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G56070.1 [+] show detail - rotamase cyclophilin 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 5.6e-69
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-40
HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2e-47
ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 45.702
superfamily Cyclophilin-like 7.2e-76
HMMPanther CYCLOPHILIN 2.7e-124
HMMPanther CYCLOPHILIN 2.7e-124
PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0

See the detailed result >

AT3G56070.1

Model type
Protein coding
Short Description
rotamase cyclophilin 2
Curator Summary
rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction.
Computational Description
rotamase cyclophilin 2 (ROC2); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, cyclosporin A binding; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 3 (TAIR:AT2G16600.1); Has 16518 Blast hits to 16486 proteins in 2631 species: Archae - 108; Bacteria - 6748; Metazoa - 2914; Fungi - 1377; Plants - 1262; Viruses - 4; Other Eukaryotes - 4105 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-G19 introduced

  • F27642 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found