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  3. RAFL06-67-H11

RAFL06-67-H11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03270)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-H11 - full reading
AAAGAAATAA AGTAATGAAG AAAACTAGAA ATGTTGCTTC TTCTCCTATT 
GAATGTGTCC ACCTCCAGAC CAAACCCACC ACCACTCTTG TTCGGTCTTT
CTTCTTCTTC CTCTTCAACT CTCAAACAAT CTCTTCCTTT ATCATCTTCT
ATCTCTTCCT CTGTTCCTTC TTCTGGTTTT GCCAATCACC AAACCTGACT
AACCCTTCTC CTCCTCCTCT CTCCGTCGCT CCCCTTCGCG GGGATGCCAA
TTCTCCACCG CCGGAATCTT CTTCTTCTCC GGCGACGAAA TCTTCTTTAA
TGATTTCTTC TAGAGATCCC AATGCCCTCT TTAGCGGCGG TGGAATCAGC
TTTTTAGCAG GAGTTAGAAC TGTGAAGTTT AGTTATGGTT ATTCTAGTCT
TAAAGGTAAA AGAGCAACAA TGGAGGATTA CTTCGAAACT AGAATCTCTG
ATGTTAATGG ACAAATGGTT GCTTTCTTTG GTGTCTTTGA TGGTCATGGT
GGAGCAAGAA CTGCAGAATA TCTTAAAAAC AATCTTTTCA AGAATTTAGT
TAGTCATGAT GATTTTATCT CAGACACTAA GAAAGCTATT GTTGAAGTTT
TTAAGCAGAC AGATGAAGAG TATCTTATTG AAGAGGCAGG ACAACCGAAG
AATGCTGGCT CGACTGCTGC GACTGCTTTT CTTATAGGTG ATAAGTTGAT
TGTTGCTAAC GTTGGTGATT CTAGAGTTGT AGCGTCAAGA AATGGTTCAG
CTGTTCCACT CTCTGATGAT CATAAACCTG ATAGATCAGA TGAGCGACAA
CGGATTGAAG ATGCTGGTGG CTTTATTATT TGGGCTGGAA CATGGCGAGT
TGGTGGAATT CTTGCGGTCT CTCGGGCTTT TGGAGATAAG CAACTTAAGC
CATATGTGAT TGCGGAGCCA GAAATTCAGG AGGAGGATAT AAGCACATTG
GAGTTTATTG TTGTTGCTAG TGATGGACTG TGGAATGTGT TGTCAAACAA
GGATGCCGTG GCAATAGTAC GAGACATTTC AGATGCGGAA ACAGCAGCAA
GAAAGCTTGT GCAAGAAGGT TACGCACGGG GTAGCTGCGA CAATATCACT
TGCATTGTTG TACGATTCGA GGTTTCTTGA GCAAGAACCA AATTCATATT
GTTCTTGTTC TATGAATGTA CCATCTTCAG CTGTTGAATA CACTAACATA
TTTGGGTTAT ACAATTTTAT AAAAGAAAGA TATATTTAAA AAAAAAAAAA
AAA

Gene models with high sequence identity

  1. AT1G43900.1 [+] show detail - Protein phosphatase 2C family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 7.9e-122
HMMPanther Protein phosphatase 2C 7.9e-122
PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
Gene3D Protein phosphatase 2C-related 3.3e-78
HMMSmart Protein phosphatase 2C-related 4.9e-91
HMMPfam Protein phosphatase 2C, N-terminal 1.2e-64
superfamily Protein phosphatase 2C-related 2e-79

See the detailed result >

AT1G43900.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 2 (TAIR:AT4G31750.1); Has 8097 Blast hits to 7992 proteins in 953 species: Archae - 12; Bacteria - 1506; Metazoa - 1655; Fungi - 811; Plants - 2687; Viruses - 9; Other Eukaryotes - 1417 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-H11 introduced

  • F12240 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::decreased width / rosette leaf::present in fewer numbers in organism / cauline leaf::epinastic / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / rosette leaf::epinastic / rosette leaf::decreased width / rosette leaf::abnormal / cauline leaf::decreased size / cauline leaf::abnormal / whole plant::decreased height
  • F18726 - Specific phenotypes were NOT observed.
  • F23719 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found