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  3. RAFL06-67-L21

RAFL06-67-L21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03280)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-L21 - full reading 
CTCATAAGTC ATTATAATAG TTTCCCCCGG ATTGTTTTTT CTTTCTTTTT 
GCTAATCATC ATCGGTTTCT TCTAATCAAA AAAAAAAACA AAAAAAAAAG 
AGGGACTACG TTCGTACAAT CCCATCCTTG GTATGGATTT CTGGCCGGAG 
TTTATGGCGA CCAGCTGGGG AAGAGAGTTC GTCGCCGGTG GTTTCGGTGG 
CGTCGCCGGC ATCATCTCCG GCTACCCCTT GGACACCCTC AGAATTCGCC 
AGCAACAGAG CTCGAAATCT GGATCTGCCT TCTCCATTCT CCGGCGGATG 
CTCGCCATTG AGGGTCCCTC CTCTCTCTAC AGAGGCATGG CTGCGCCTTT 
GGCCTCCGTC ACTTTTCAGA ATGCTATGGT ATTCCAGATA TACGCCATAT 
TCTCTCGCTC TTTTGATTCC TCTGTTCCTC TGGTAGAGCC TCCTTCCTAC 
AGAGGCGTTG CTCTTGGTGG TGTTGCCACC GGTGCTGTAC AGAGCCTCTT 
GCTCACCCCT GTCGAGCTCA TCAAGATTCG TCTCCAGCTT CAGCAGACTA 
AGTCTGGTCC CATCACCTTG GCCAAGAGCA TCCTTAGGAG ACAGGGCCTT 
CAGGGGCTTT ACAGAGGCCT CACCATCACC GTGCTCCGAG ATGCTCCCGC 
TCATGGCCTC TACTTCTGGA CCTATGAGTA CGTCAGAGAA AGGCTTCACC 
CCGGCTGCAG AAAGACCGGA CAAGAAAACC TCAGGACCAT GCTCGTGGCT 
GGTGGCCTTG CTGGAGTGGC CAGCTGGGTC GCTTGTTATC CTCTTGATGT 
CGTCAAGACC AGACTCCAAC AAGGTCATGG GGCTTACGAG GGCATTGCCG 
ATTGTTTTCG CAAGAGCGTC AAACAGGAAG GCTATACGGT TCTCTGGCGT 
GGCCTCGGGA CTGCAGTTGC CAGGGCCTTT GTGGTCAACG GTGCTATCTT 
TGCTGCTTAT GAGGTAGCCT TGCGGTGTCT ATTCAATCAA TCGCCATCCC 
CAGATATTGT CACAGGAGAT TGAGTGAGTA AAGGGCAAAG AAGGTTCATT 
AGTTGCAGTC TGGACCTGTG AATGTAGTTA ATATTAGCAC ATAGTTTGAG 
ATGGATTTGG ATTGCATAGC ATTGGTCAAA CAAATCTGAC TCGCTTTAGG 
GATCAGGCAG TTTACTAATC ACAGTTGATC ATAGAGACGT TCCAGAAATG 
ATTACAAACC CCAAAGAAAA CAGATGAAAT GAAAATTCTG TTACCAAAAA 
AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G79900.1 [+] show detail - Mitochondrial substrate carrier family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Mitochondrial substrate carrier 4.3e-68
HMMPfam Mitochondrial substrate/solute carrier 6.3e-14
HMMPfam Mitochondrial substrate/solute carrier 1.1e-19
HMMPfam Mitochondrial substrate/solute carrier 1.8e-24
FPrintScan Mitochondrial carrier protein 1.2e-07
FPrintScan Mitochondrial carrier protein 1.2e-07
FPrintScan Mitochondrial carrier protein 1.2e-07
FPrintScan Mitochondrial carrier protein 1.2e-07
ProfileScan Mitochondrial substrate/solute carrier 14.618
ProfileScan Mitochondrial substrate/solute carrier 21.054
ProfileScan Mitochondrial substrate/solute carrier 23.35
HMMPanther MITOCHONDRIAL CARRIER PROTEIN-RELATED 6.8e-158
HMMPanther Mitochondrial substrate carrier 6.8e-158

See the detailed result >

AT1G79900.1

Model type
Protein coding
Short Description
Mitochondrial substrate carrier family protein
Curator Summary
encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol
Computational Description
BAC2; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT5G46800.1); Has 25782 Blast hits to 14100 proteins in 457 species: Archae - 0; Bacteria - 6; Metazoa - 10775; Fungi - 7497; Plants - 4679; Viruses - 6; Other Eukaryotes - 2819 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-L21 introduced

  • F18743 - Specific phenotypes were NOT observed.
  • F24631 - Specific phenotypes were NOT observed.
  • F27612 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found