1. Home
  2. Full-length cDNAs
  3. RAFL06-67-M18

RAFL06-67-M18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03281)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-M18 - full reading 
GGAAGAAGGA TAAGAAAAAA TGGCAGGTGA TGGCGTAGAA AATGCAAAGC 
CACCGCAGAA ACAGGAAGAT CTTCAGCCTC ATCCGGTGAA GGATCAACTT 
TACGGTATCA CTTACTGCCT CACAAGTCCT CCTCCTTGGC CGGAGACAAT 
ACTTCTGGGG TTTCAACACT ACTTAGTGAT GCTTGGAACA ACTGTTCTCA 
TTCCAACAAT GTTAGTTTCA AAGATTGATG CAAGAAACGA AGATAAGGTA 
AAGTTGATTC AGACGTTGCT CTTTGTGTCT GGAATCAACA CGTTATTTCA 
AAGCTTCTTT GGGACTCGTC TTCCTGCTGT CATTGGAGCT TCTTACTCTT 
ATGTGCCAAC TACAATGTCA ATCGTCTTAG CTGCTCGTTA CAATGACATT 
ATGGATCCTC AAAAGAGATT TGAACAGATC ATGCGTGGAA TCCAAGGTGC 
TCTTATTATT GCCTCATTTC TTCATATCCT TGTTGGTTTC AGTGGCCTTT 
GGCGCAATGT TACTAGGTTT TTGAGTCCCT TATCTGCAGT TCCTCTTGTA 
GCCTTTTCTG GCTTTGGACT CTATGAACAA GGATTCCCTA TGCTAGCAAA 
ATGCATTGAG ATTGGACTGC CTGAGATCAT ACTTCTTGTC ATATTCTCAC 
AGTACATTCC TCATCTGATG CAAGGAGAAA CATGTTCTAA CTTCTTCCAC 
CGATTTGCTG TGATATTCTC AGTGGTGATT GTGTGGCTTT ATGCATACAT 
TCTAACCATT GGTGGGGCTT ATAGTAACAC AGAAATCAAT ACTCAAATCA 
GTTGCAGAAC CGACCGTGCT GGCATCATTA GCGCTTCTCC ATGGATTAGA 
GTGCCTCACC CTATTCAATG GGGAGGAGCT CCAACTTTCA ATGCAGGGGA 
TATTTTTGCT ATGATGGCTG CTTCTTTCGT TTCTCTTGTC GAGTCTACAG 
GGACATACAT TGCTGTATCG AGATATGCAA GTGCAACACC AATCCCACCT 
TCTGTGCTTA GTCGTGGAAT CGGTTGGCAG GGATTTGGAA TTCTTCTCTG 
TGGATTATTT GGAGCAGGAA ATGCAACATC CGTGTCTGTA GAGAATGCCG 
GCTTGTTGGC TGTAACACGC GTTGGTAGTA GACGTGTAAT TCAAGTAGCA 
GCTGGATTCA TGATCTTCTT CTCCATTCTT GGTAAATTTG GGGCTATCTT 
TGCTTCGATT CCAGCTCCTA TCGTCGCAGC TCTTTACTGT TTGTTCTTCT 
CATACGTTGG TGCTGGTGGT CTAAGTCTAA TCCAGTTCTG CAATCTGAAC 
AGTTTCAGAA CTAAGTTCAT TCTTGGATTC TCCATCTTCA TGGGCTTATC 
CATACCTCAA TACTTTTACC AGTACACAAC TTTGGAAACC TATGGACCCG 
TTCGGACATC CGCAACATGG TTCAACAACA TTATAAACGT TCCTTTCTCA 
TCTAAAGCAT TTGTTTCCGG GATTTTGGCC TTCTTTCTAG ACACGACATT 
GCCTCCAAAG GACAAGACGA CAAAGAAAGA TCGAGGACTA GTTTGGTGGA 
AGCGATTTAA ATCGTTCCAA TCTGATAACA GAAGCGAAGA GTTCTACTCT 
TTGCCTCTCA ATCTCAGCAA GTACTTTCCT TCTCACTGAT GAAATGGCAT 
TGTAAACTTC AAGAAACAGA GTTTGATCGA TTCAGTGTCC TGTTTCCCGC 
ACTTGTTTCA GTACTGATCT CGCAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT1G10540.1 [+] show detail - nucleobase-ascorbate transporter 8
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Xanthine/uracil/vitamin C permease 3.2e-69
HMMPanther SODIUM-DEPENDENT VITAMIN C TRANSPORTER 4.9e-281
HMMPanther Xanthine/uracil/vitamin C permease 4.9e-281

See the detailed result >

AT1G10540.1

Model type
Protein coding
Short Description
nucleobase-ascorbate transporter 8
Computational Description
nucleobase-ascorbate transporter 8 (NAT8); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 7 (TAIR:AT1G60030.1); Has 9247 Blast hits to 9232 proteins in 1900 species: Archae - 67; Bacteria - 7567; Metazoa - 351; Fungi - 128; Plants - 453; Viruses - 1; Other Eukaryotes - 680 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-M18 introduced

  • F11112 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found