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  3. RAFL06-67-P17

RAFL06-67-P17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03285)

full reading [+] show sequence

Nucleotide sequence: RAFL06-67-P17 - full reading 
CTTCGAAACT CCATCATCAT CCTCACCGCA GAAAATCCCC AATACGTTGC 
TTCTGTCTCT TAATCATAAC CATGTCCTCC ATTCTCATCC TTCTCTTCTC 
TCTCTTCCTC TTCTCCTCTC CCTCCTCCTC CTCCCGTCAC CACCACCACC 
ACAATTCCGG CGACACTTCT CCGGTCAATC CTTCGTCGTC TCTCGCCGCT 
CAGATCCGTC TCGCTTGTAA CGCAACTCGT TACCCAGACC AATGCGTCTC 
TTCCCTATCC GAACAGGGTC GGGTTCCTCC GGATCCTAAA CCAATCCAGA 
TCATTCACTC AGCGATCTCA TTCTCATTCC AAAACCTCAA AACCGCCCAA 
TCAAAAATCA AGTCTATTGT AGACTCGTCC GTAGGGAATC TAAACCGTAC 
AAACGCCGCG AACACGTGTC TCCAGCTTCT CACTTACTCC GAGCACCGCA 
CTCAATCGAC GGATCAAGCT TTAACACGTG GCAAAATCAA AGACGCTCGA 
GCTTGGATGA GCGCTGCTCT AGTGTACCAG TACGATTCAT GGTCAGCGCT 
CAAGTACGTC AACGACACGA GCCAAGTAGG TGAAACGATG TCGTTTCTCG 
ACGGACTTAT CCACGTCACC AGCAACGCGC TTAGCATGAT GGTATCGTAC 
GATAACTTCG GAGACAACGT CGCGTCGTGG ACTTACCCAG CAACGGAACG 
TGACGGGTTT TGGGAAAAGA CTGGGCCTGG TTTGGGCTTA GATCCGAGTA 
CAGGGCTTAA TTTGGGTTTT CCTTCCGGTT TAAAAGAAGA CGTGACGGTG 
TGTAAAGACG GAAAATGCGG TTACAAGACG GTGCAAGACG CCGTTAACGC 
TGCGCCGGAG GATAACGGAA TGCGTAAGTT CGTTATAAAG ATTAGCGAAG 
GAGTCTACGA GGAGAACGTT ATTGTTCCGT TTGAGAAGAA GAACGTTGTG 
TTTATCGGTG ACGGTATGGG CAAAACGGTC ATTACAGGTT CGTTAAACGC 
CGGTATGCCT GGGATCACTA CGTACAATAC TGCAACTGTC GGAGTGGTAG 
GAGATGGATT CATGGCTCGT GATCTAACGT TCCAGAACAC GGCGGGACCA 
GACGCTCACC AAGCGGTGGC GTTTAGATCC GACAGCGATT TTTCTCTGAT 
CGAGAATTGC GAGTTCCTTG GGAACCAAGA CACTCTCTAT GCCCATGGTC 
TTCGTCAGTT CTACAAAAAC TGTCGTATCC AAGGAAATGT TGACTTTATC 
TTTGGGAATT CAGCTGCTGT CTTCCAAGAC TGTGAAATCC TAATCGCACC 
GCGTCAAATT AACCCTGAAA AGGGCGAGAA AAACGCAGTC ACTGCCCAAG 
GAAGGATTGA CCCGTCCCAG TCCACGGGTT TCGTGTTCTT GAACTGTTTG 
ATTAACGGAA CAGAGGAGTA CATGAAGCTG TTTAAAGCTA ACCCTAAGGT 
GCATAAGAAC TTCTTGGGGA GGCCATGGAA AGATTACTCA AGGACTGTGT 
TTATAGGTTG TAATTTAGAG GCTTTGATTA CTCCTGATGG ATGGTTACCT 
TGGAGCGGGG ATTTCGCGCT CAAGACACTT TATTACGGTG AATCTAAGAA 
CACGGGTCCG GGATCAGATA GGTCACAAAG GGTTTCATGG AGCAGTCAGA 
TACCGGACGA GCATGTTCAT GTGTATTCGG TGGCTAACTT TATTCAGGCT 
GATGAGTGGG CTTCGATGTC TGCTTAAATC AATCTTTAAG ACTATAAGGG 
GTTTAGGAAT GTTTTAAAAG AAGAAAACCA TCTCATTGTA ATTTAGTTGA 
TAAACTGTTT TAAACATAAA AGCAAACATT GCATTCATGT TATATCAATT 
GAGAGTTCAT AGTCTTAGGA CTAATTGAAG TAAAACAATA AAGTTTCAAA 
ACTTGGAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT5G09760.1 [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Pectinesterase inhibitor 7.8e-27
HMMTigr Pectinesterase inhibitor 2.4e-06
HMMPfam Pectinesterase, catalytic 4.4e-126
HMMPfam Pectinesterase inhibitor 1.4e-19
superfamily Pectin lyase fold/virulence factor 3.7e-98
superfamily Pectinesterase inhibitor 4.2e-12
Gene3D Pectinesterase inhibitor 0.0005
Gene3D Pectin lyase fold 1.5e-106

See the detailed result >

AT5G09760.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT5G64640.1); Has 2807 Blast hits to 2761 proteins in 473 species: Archae - 6; Bacteria - 874; Metazoa - 1; Fungi - 174; Plants - 1725; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-67-P17 introduced

  • F05807 - Specific phenotypes were NOT observed.
  • F07407 - Specific phenotypes were NOT observed.
  • F08524 - rosette leaf::dark green / rosette leaf::decreased size
  • F11726 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / stem::abnormal
  • F22144 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found